RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 UBXN11Q5T124 520 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 LAIR1Q6GTX8 287 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 TWF2Q6IBS0 349 aaKnown RBP9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 TPRG1Q6ZUI0 275 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 GRASPQ7Z6J2 395 aaPredicted RBP9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 PLA2G4DQ86XP0 818 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 KSR1Q8IVT5 923 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 COLGALT2Q8IYK4 626 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 FGF13Q92913 245 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 SH2D3AQ9BRG2 576 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 FDXACB1Q9BRP7 624 aaPredicted RBP9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 PIDD1Q9HB75 910 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 RIC8AQ9NPQ8 531 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 CHST12Q9NRB3 414 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 CHST7Q9NS84 486 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 FAM217BQ9NTX9 383 aaPredicted RBP9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 MIOSQ9NXC5 875 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 GMEB2Q9UKD1 530 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 CDH7Q9ULB5 785 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 ZMIZ1Q9ULJ6 1067 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 PIN4Q9Y237 131 aaKnown RBP9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 FAN1Q9Y2M0 1017 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 PCDHB2Q9Y5E7 798 aa9.59□□□□□ -0.87
HMGB1P39-201ENST00000366304 GAS2O43903 313 aaKnown RBP9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 RNF40O75150 1001 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 ALDH2P05091 517 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 RETP07949 1114 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 GLUD2P49448 558 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 CLK2P49760 499 aaKnown RBP9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 PRKCEQ02156 737 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 CSRP2Q16527 193 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 ZBTB41Q5SVQ8 909 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 TMTC3Q6ZXV5 915 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 NIPA1Q7RTP0 329 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 MRPL10Q7Z7H8 261 aaKnown RBP9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 CTCFLQ8NI51 663 aaPredicted RBP9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 RABGGTAQ92696 567 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 SCLT1Q96NL6 688 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 LZTS2Q9BRK4 669 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 TMEM175Q9BSA9 504 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 GPR62Q9BZJ7 368 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 HCFC1R1Q9NWW0 138 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 ZDHHC7Q9NXF8 308 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 TSR3Q9UJK0 312 aaKnown RBP9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 WDFY3Q8IZQ1 3526 aa9.58□□□□□ -0.88
HMGB1P39-201ENST00000366304 ERICH2A1L162 156 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 ADAM12O43184 909 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 ZMYND10O75800 440 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 OATP04181 439 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 HOXA11P31270 313 aaPredicted RBP9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 DSC1Q08554 894 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 FUT2Q10981 343 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 TRDNQ13061 729 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 GAS6Q14393 721 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 SF3A2Q15428 464 aaKnown RBP9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 ZNF746Q6NUN9 644 aaPredicted RBP9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 PRSS55Q6UWB4 352 aaPredicted RBP9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 PRR23BQ6ZRT6 265 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 SMG8Q8ND04 991 aaKnown RBP9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 HDAC7Q8WUI4 952 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 PHKBQ93100 1093 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 GJA10Q969M2 543 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 LENG9Q96B70 501 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 MBOAT7Q96N66 472 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 GCOM2Q9BZD3 368 aaPredicted RBP9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 OSBPL3Q9H4L5 887 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 PLEKHA4Q9H4M7 779 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 MINDY3Q9H8M7 445 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 HEBP1Q9NRV9 189 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 C2orf42Q9NWW7 574 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 CACNG4Q9UBN1 327 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 CEP131Q9UPN4 1083 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 PCDHA10Q9Y5I2 948 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 ADGRG1Q9Y653 693 aa9.57□□□□□ -0.88
HMGB1P39-201ENST00000366304 IGKV6-21A0A0C4DH24 114 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 SH2B2O14492 632 aaPredicted RBP9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 GPR37O15354 613 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 TOP3BO95985 862 aaKnown RBP9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 PSAPP07602 524 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 SPINK2P20155 84 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 FECHP22830 423 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 TMOD1P28289 359 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 MAGEA9P43362 315 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 SATB1Q01826 763 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 HDAC1Q13547 482 aaPredicted RBP9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 CCDC6Q16204 474 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 WDR44Q5JSH3 913 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 RTP2Q5QGT7 225 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 SWT1Q5T5J6 900 aaKnown RBP9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 JAKMIP3Q5VZ66 844 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 B4GALNT3Q6L9W6 998 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 RSPO2Q6UXX9 243 aaPredicted RBP9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 GPIHBP1Q8IV16 184 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 NPAS3Q8IXF0 933 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 CELF5Q8N6W0 485 aaKnown RBP9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 NCOA7Q8NI08 942 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 ING5Q8WYH8 240 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 ZNF577Q9BSK1 485 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 CHRDQ9H2X0 955 aa9.56□□□□□ -0.88
HMGB1P39-201ENST00000366304 RSAD1Q9HA92 442 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms