RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 TMEM88BA6NKF7 163 aa14.52□□□□□ -0.09
HMGB1-202ENST00000339872 PMM2O15305 246 aa14.52□□□□□ -0.09
HMGB1-202ENST00000339872 DYNC1LI2O43237 492 aaPredicted RBP14.52□□□□□ -0.09
HMGB1-202ENST00000339872 GFPT2O94808 682 aa14.52□□□□□ -0.09
HMGB1-202ENST00000339872 HOXD8P13378 290 aaPredicted RBP14.52□□□□□ -0.09
HMGB1-202ENST00000339872 RFX1P22670 979 aa14.52□□□□□ -0.09
HMGB1-202ENST00000339872 ARHGAP44Q17R89 818 aa14.52□□□□□ -0.09
HMGB1-202ENST00000339872 ZPBP2Q6X784 338 aa14.52□□□□□ -0.09
HMGB1-202ENST00000339872 LENG1Q96BZ8 264 aaPredicted RBP14.52□□□□□ -0.09
HMGB1-202ENST00000339872 TSGA10Q9BZW7 698 aa14.52□□□□□ -0.09
HMGB1-202ENST00000339872 L2HGDHQ9H9P8 463 aa14.52□□□□□ -0.09
HMGB1-202ENST00000339872 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.52□□□□□ -0.09
HMGB1-202ENST00000339872 DAAM1Q9Y4D1 1078 aa14.52□□□□□ -0.09
HMGB1-202ENST00000339872 BZW2Q9Y6E2 419 aaKnown RBP14.52□□□□□ -0.09
HMGB1-202ENST00000339872 KAT6AQ92794 2004 aa14.52□□□□□ -0.09
HMGB1-202ENST00000339872 A0A0B4J269 797 aa14.51□□□□□ -0.09
HMGB1-202ENST00000339872 RBAK-RBAKDNI3L0D1 243 aa14.51□□□□□ -0.09
HMGB1-202ENST00000339872 LDHAP00338 332 aaKnown RBP14.51□□□□□ -0.09
HMGB1-202ENST00000339872 ZNF865P0CJ78 1059 aaPredicted RBP14.51□□□□□ -0.09
HMGB1-202ENST00000339872 FERP16591 822 aa14.51□□□□□ -0.09
HMGB1-202ENST00000339872 SOX5P35711 763 aa14.51□□□□□ -0.09
HMGB1-202ENST00000339872 PRKCIP41743 596 aa14.51□□□□□ -0.09
HMGB1-202ENST00000339872 MAGEA1P43355 309 aa14.51□□□□□ -0.09
HMGB1-202ENST00000339872 SLC18A3Q16572 532 aa14.51□□□□□ -0.09
HMGB1-202ENST00000339872 ZBTB41Q5SVQ8 909 aa14.51□□□□□ -0.09
HMGB1-202ENST00000339872 ARHGEF19Q8IW93 802 aa14.51□□□□□ -0.09
HMGB1-202ENST00000339872 UBE2TQ9NPD8 197 aaPredicted RBP14.51□□□□□ -0.09
HMGB1-202ENST00000339872 RBAKQ9NYW8 714 aaPredicted RBP14.51□□□□□ -0.09
HMGB1-202ENST00000339872 ADAMTS1Q9UHI8 967 aa14.51□□□□□ -0.09
HMGB1-202ENST00000339872 A0A087X0T9 212 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 MACROD2A1Z1Q3 448 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 INO80B-WBP1J3KQ70 363 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 MAGEB2O15479 319 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 CLDN3O15551 220 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 EVI5O60447 810 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 FAM228BP0C875 321 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 GTF2H1P32780 548 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 TM4SF4P48230 202 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 PPFIA1Q13136 1202 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 PSMD6Q15008 389 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 OLFML2BQ68BL8 750 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 CYP4F22Q6NT55 531 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 CRELD2Q6UXH1 353 aaPredicted RBP14.5□□□□□ -0.09
HMGB1-202ENST00000339872 ZNF571Q7Z3V5 609 aaPredicted RBP14.5□□□□□ -0.09
HMGB1-202ENST00000339872 TLK2Q86UE8 772 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 FNBP1Q96RU3 617 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 PPP1R16BQ96T49 567 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 TCHPQ9BT92 498 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 INO80BQ9C086 356 aaPredicted RBP14.5□□□□□ -0.09
HMGB1-202ENST00000339872 GPR88Q9GZN0 384 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 GJD2Q9UKL4 321 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 GNEQ9Y223 722 aaKnown RBP14.5□□□□□ -0.09
HMGB1-202ENST00000339872 AKT3Q9Y243 479 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 DUSP10Q9Y6W6 482 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 ASAP2O43150 1006 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 CA12O43570 354 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 TOM1L1O75674 476 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 WNT7BP56706 349 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 CHMP4BP1P59074 171 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 ENPEPQ07075 957 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 IRF5Q13568 498 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 HSP90AA2PQ14568 343 aaPredicted RBP14.5□□□□□ -0.09
HMGB1-202ENST00000339872 GRIK4Q16099 956 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 SEZ6Q53EL9 994 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 LMBRD2Q68DH5 695 aaPredicted RBP14.5□□□□□ -0.09
HMGB1-202ENST00000339872 SV2AQ7L0J3 742 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 ZBTB33Q86T24 672 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 FBXL13Q8NEE6 735 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 SEMA4DQ92854 862 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 FAM84AQ96KN4 292 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 ACO2Q99798 780 aaKnown RBP14.5□□□□□ -0.09
HMGB1-202ENST00000339872 PDE11AQ9HCR9 933 aa14.5□□□□□ -0.09
HMGB1-202ENST00000339872 CTAGE9A4FU28 777 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 TNNI1P19237 187 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 CTGFP29279 349 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 PTENP60484 403 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 TMEM132AQ24JP5 1023 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 MTHFD1LQ6UB35 978 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 LINC01465Q8N7H1 131 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 TAS1R2Q8TE23 839 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 TSC1Q92574 1164 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 HHIPL1Q96JK4 782 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 LUC7LQ9NQ29 371 aaKnown RBP14.49□□□□□ -0.09
HMGB1-202ENST00000339872 COQ4Q9Y3A0 265 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 A6NJR5 290 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 SLU7O95391 586 aaKnown RBP14.49□□□□□ -0.09
HMGB1-202ENST00000339872 VTNP04004 478 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 TMOD1P28289 359 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 PHKA2P46019 1235 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 FMNL3Q8IVF7 1028 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 PPM1KQ8N3J5 372 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 TXLNBQ8N3L3 684 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 SECISBP2LQ93073 1101 aaKnown RBP14.49□□□□□ -0.09
HMGB1-202ENST00000339872 NAPGQ99747 312 aaPredicted RBP14.49□□□□□ -0.09
HMGB1-202ENST00000339872 MINDY3Q9H8M7 445 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 RAB20Q9NX57 234 aa14.49□□□□□ -0.09
HMGB1-202ENST00000339872 ACKR2O00590 384 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 GPC3P51654 580 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 MBTD1Q05BQ5 628 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 PRPF4BQ13523 1007 aaKnown RBP14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms