RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 REREQ9P2R6 1566 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 COX10Q12887 443 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 TSC22D1Q15714 1073 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 ZBED8Q8IZ13 594 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 MDM1Q8TC05 714 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 PDCD6IPQ8WUM4 868 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 NSL1Q96IY1 281 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 FOXP3Q9BZS1 431 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 H2AFY2Q9P0M6 372 aaPredicted RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 APPL1Q9UKG1 709 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 SNX24Q9Y343 169 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 AP3B1O00203 1094 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 PSTPIP1O43586 416 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 SRP72O76094 671 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 ECM2O94769 699 aaPredicted RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 HNRNPH1P31943 449 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 PTPN12Q05209 780 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 NSMFQ6X4W1 530 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 RNF139Q8WU17 664 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 GPR101Q96P66 508 aaPredicted RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 EIF6P56537 245 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 ALKBH5Q6P6C2 394 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 ARMCX2Q7L311 632 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 CLIC6Q96NY7 704 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 TRAPPC9Q96Q05 1148 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 MMTAG2Q9BU76 263 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 ASNSD1Q9NWL6 643 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 ANAPC7Q9UJX3 599 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 hCG_1642624A0A1W2PR95 340 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 UFL1O94874 794 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 KCNJ6P48051 423 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 SERPINH1P50454 418 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 BTKQ06187 659 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 TFDP2Q14188 446 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 NAIF1Q69YI7 327 aaPredicted RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 HEATR4Q86WZ0 1026 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 RHPN2Q8IUC4 686 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 RNF26Q9BY78 433 aaPredicted RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 NDST4Q9H3R1 872 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 LRRC4Q9HBW1 653 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 PSMC3IPQ9P2W1 217 aaPredicted RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 KIAA0556O60303 1618 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 PNMA8CA0A1B0GUJ8 204 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 ANKRD65E5RJM6 399 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 H2AFYO75367 372 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 SPANXN2Q5MJ10 180 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 KIAA0825Q8IV33 1275 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 CCDC60Q8IWA6 550 aaPredicted RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 PPM1NQ8N819 430 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 DIS3LQ8TF46 1054 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 TMA16Q96EY4 203 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 USP44Q9H0E7 712 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 YTHDC2Q9H6S0 1430 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 ITGA6P23229 1130 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 ROR1Q01973 937 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 KBTBD12Q3ZCT8 623 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 PRPF39Q86UA1 669 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 CEP44Q9C0F1 390 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 RABGEF1Q9UJ41 708 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 STOML2Q9UJZ1 356 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 SPDYE5A6NIY4 337 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 CYTH3O43739 400 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 CCT3P49368 545 aaKnown RBP6.51□□□□□ -1.37
CSMD1-201ENST00000335551 SCRN1Q12765 414 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 SPDYE7PQ495Y7 208 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 SLC7A3Q8WY07 619 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 C17orf80Q9BSJ5 609 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 PRRG3Q9BZD7 231 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 RNPEPQ9H4A4 650 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 SMARCAL1Q9NZC9 954 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 SH3TC1Q8TE82 1336 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 ASXL2Q76L83 1435 aa6.51□□□□□ -1.37
CSMD1-201ENST00000335551 CLASP1Q7Z460 1538 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 GPATCH8Q9UKJ3 1502 aaKnown RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 SPAG6O75602 509 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 BCL10O95999 233 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 RCN1Q15293 331 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 LRRC8DQ7L1W4 858 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 ZNF786Q8N393 782 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 HSPH1Q92598 858 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 TRIM51Q9BSJ1 452 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 KIFC1Q9BW19 673 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 SLC13A1Q9BZW2 595 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 HPCAL4Q9UM19 191 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 TESPA1A2RU30 521 aaPredicted RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 KRT20P35900 424 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 RPS6P62753 249 aaKnown RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 CYP27A1Q02318 531 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 FCHO2Q0JRZ9 810 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 DTNAQ9Y4J8 743 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 MYH7BA7E2Y1 1941 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 CAPZA2P47755 286 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 SERPINB8P50452 374 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 KCNQ4P56696 695 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 ARL6IP4Q66PJ3 421 aaKnown RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 RFX8Q6ZV50 586 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 NEK10Q6ZWH5 1172 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 KRT77Q7Z794 578 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 CDKL3Q8IVW4 592 aaPredicted RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 GALNT4Q8N4A0 578 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms