RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ANKS3Q6ZW76 656 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 AGR3Q8TD06 166 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 TRIP10Q15642 601 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 LRRC24Q50LG9 513 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 UNC45AQ9H3U1 944 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 ZNF804BA4D1E1 1349 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 FAM47DPA6NHR8 397 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 PDE5AO76074 875 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 SDC4P31431 198 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 PDXDC2PQ6P474 469 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 XXYLT1Q8NBI6 393 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 BBS2Q9BXC9 721 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 H2AFY2Q9P0M6 372 aaPredicted RBP14.64□□□□□ -0.07
CSPG4-201ENST00000308508 ENO3P13929 434 aaPredicted RBP14.64□□□□□ -0.07
CSPG4-201ENST00000308508 JAK3P52333 1124 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 TBL3Q12788 808 aaKnown RBP14.64□□□□□ -0.07
CSPG4-201ENST00000308508 DSTYKQ6XUX3 929 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 STAP1Q9ULZ2 295 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 BMP3P12645 472 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 TRIP4Q15650 581 aaPredicted RBP14.64□□□□□ -0.07
CSPG4-201ENST00000308508 MDH1BQ5I0G3 518 aa14.64□□□□□ -0.07
CSPG4-201ENST00000308508 SETD3Q86TU7 594 aaPredicted RBP14.64□□□□□ -0.07
CSPG4-201ENST00000308508 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.64□□□□□ -0.07
CSPG4-201ENST00000308508 ZNF197O14709 1029 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 PRPF4O43172 522 aaKnown RBP eCLIP14.63□□□□□ -0.07
CSPG4-201ENST00000308508 STRNO43815 780 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 BNIP3LO60238 219 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 RALBP11234 206 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 ZNF211Q13398 564 aaPredicted RBP14.63□□□□□ -0.07
CSPG4-201ENST00000308508 ANGPT1Q15389 498 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 FAM83BQ5T0W9 1011 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 RHPN2Q8IUC4 686 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.63□□□□□ -0.07
CSPG4-201ENST00000308508 RNF25Q96BH1 459 aaPredicted RBP14.63□□□□□ -0.07
CSPG4-201ENST00000308508 COQ7Q99807 217 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 SIKE1Q9BRV8 207 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 NDEL1Q9GZM8 345 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 PARVAQ9NVD7 372 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 PSD3Q9NYI0 1048 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 GDAQ9Y2T3 454 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 MAGEA13PA6NCF6 341 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 LRRIQ3A6PVS8 624 aaPredicted RBP14.63□□□□□ -0.07
CSPG4-201ENST00000308508 NCK2O43639 380 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 FTLP02792 175 aaPredicted RBP14.63□□□□□ -0.07
CSPG4-201ENST00000308508 LSP1P33241 339 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 BCAR1P56945 870 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 TNFAIP2Q03169 654 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 WASHC5Q12768 1159 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 CSTF3Q12996 717 aaKnown RBP14.63□□□□□ -0.07
CSPG4-201ENST00000308508 ADRM1Q16186 407 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 SLC10A5Q5PT55 438 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 ENOSF1Q7L5Y1 443 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 STAG2Q8N3U4 1231 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 GALNT4Q8N4A0 578 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 ST13P5Q8NFI4 369 aaPredicted RBP14.63□□□□□ -0.07
CSPG4-201ENST00000308508 RFFLQ8WZ73 363 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 PLEKHA8Q96JA3 519 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 CDYLQ9Y232 598 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 BIVM-ERCC5R4GMW8 1640 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 TTC39CQ8N584 583 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 GANCQ8TET4 914 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 MYO1GB0I1T2 1018 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 GUCA1CO95843 209 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 PHKA1P46020 1223 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 PEX3P56589 373 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 STXBP2Q15833 593 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 C1orf228Q6PIY5 440 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 DNAJC10Q8IXB1 793 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 CASP10Q92851 521 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 ERBB4Q15303 1308 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 NUP107P57740 925 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 IYDQ6PHW0 289 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 KIAA0825Q8IV33 1275 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 PSMC3IPQ9P2W1 217 aaPredicted RBP14.63□□□□□ -0.07
CSPG4-201ENST00000308508 YEATS2Q9ULM3 1422 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 APOL1O14791 398 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 PSMA3P25788 255 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 ARPP19P56211 112 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 ELMSAN1Q6PJG2 1045 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 MFN1Q8IWA4 741 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 BBS7Q8IWZ6 715 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 PPP1R36Q96LQ0 422 aa14.63□□□□□ -0.07
CSPG4-201ENST00000308508 C20orf96Q9NUD7 363 aaPredicted RBP14.63□□□□□ -0.07
CSPG4-201ENST00000308508 ZNF839A8K0R7 811 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 HMOX2P30519 316 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 GNA15P30679 374 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 PRCPP42785 496 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 KCNQ4P56696 695 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 MICU2Q8IYU8 434 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 OR6P1Q8NGX9 317 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 ATL2Q8NHH9 583 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 BHMT2Q9H2M3 363 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 SRP72O76094 671 aaKnown RBP14.62□□□□□ -0.07
CSPG4-201ENST00000308508 ATP1A1P05023 1023 aaKnown RBP14.62□□□□□ -0.07
CSPG4-201ENST00000308508 SLC1A1P43005 524 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 STX3Q13277 289 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 TTC33Q6PID6 262 aaPredicted RBP14.62□□□□□ -0.07
CSPG4-201ENST00000308508 SP110Q9HB58 689 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 SOX13Q9UN79 622 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 CLDN3O15551 220 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms