RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 TRAPPC12Q8WVT3 735 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 DESI2Q9BSY9 194 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 TRIM62Q9BVG3 475 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 RUSC1Q9BVN2 902 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 CALN1Q9BXU9 219 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 TRIM31Q9BZY9 425 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 HAUS4Q9H6D7 363 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 PPANQ9NQ55 473 aaKnown RBP9.92□□□□□ -0.82
PTPRE-202ENST00000306042 DLG5Q8TDM6 1919 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 TBKBP1A7MCY6 615 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 OGTO15294 1046 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 ALDH1A3P47895 512 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 TAF6P49848 677 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 RBL2Q08999 1139 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 RWDD4Q6NW29 188 aaKnown RBP9.92□□□□□ -0.82
PTPRE-202ENST00000306042 C4orf50Q6ZRC1 276 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 PASD1Q8IV76 773 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 PURBQ96QR8 312 aaKnown RBP9.92□□□□□ -0.82
PTPRE-202ENST00000306042 TSPYL1Q9H0U9 437 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 TRPC7Q9HCX4 862 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 SLC16A3O15427 465 aaKnown RBP9.92□□□□□ -0.82
PTPRE-202ENST00000306042 SART1O43290 800 aaKnown RBP9.92□□□□□ -0.82
PTPRE-202ENST00000306042 NNMTP40261 264 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 TADA2BQ86TJ2 420 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 NCAPGQ9BPX3 1015 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 KANSL3Q9P2N6 904 aa9.92□□□□□ -0.82
PTPRE-202ENST00000306042 LRG1P02750 347 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 NPTX2P47972 431 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 PRKCZQ05513 592 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 UAP1Q16222 522 aaPredicted RBP9.91□□□□□ -0.82
PTPRE-202ENST00000306042 MPZL3Q6UWV2 235 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 CD302Q8IX05 232 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 KLHL7Q8IXQ5 586 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 SLC5A5Q92911 643 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 ZNF512Q96ME7 567 aaPredicted RBP9.91□□□□□ -0.82
PTPRE-202ENST00000306042 GMLQ99445 158 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 UBN1Q9NPG3 1134 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 LMCD1Q9NZU5 365 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 PIK3CDO00329 1044 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 TOM1L1O75674 476 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 RHOBTB3O94955 611 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 THP07101 528 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 CYP3A4P08684 503 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 PDGFRBP09619 1106 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 CCL23P55773 120 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 LEKR1Q6ZMV7 388 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 GLI3P10071 1580 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 CSDE1O75534 798 aaKnown RBP9.91□□□□□ -0.82
PTPRE-202ENST00000306042 FARP2O94887 1054 aaPredicted RBP9.91□□□□□ -0.82
PTPRE-202ENST00000306042 APOEP02649 317 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 ALDH2P05091 517 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 INHAP05111 366 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 HIRAP54198 1017 aaPredicted RBP9.91□□□□□ -0.82
PTPRE-202ENST00000306042 SFSWAPQ12872 951 aaKnown RBP9.91□□□□□ -0.82
PTPRE-202ENST00000306042 PRPSAP1Q14558 356 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 KSR1Q8IVT5 923 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 CREBZFQ9NS37 354 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 DBR1Q9UK59 544 aaKnown RBP9.91□□□□□ -0.82
PTPRE-202ENST00000306042 CACNA1FO60840 1977 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 LGALS16A8MUM7 142 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 H7C4K7 107 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 CALB1P05937 261 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 ODC1P11926 461 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 PSMA2P25787 234 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 STK4Q13043 487 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 GRB10Q13322 594 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 TUBB2AQ13885 445 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 PTPN21Q16825 1174 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 DUSP28Q4G0W2 176 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 KCTD6Q8NC69 237 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 CPB2Q96IY4 423 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 TUBB2BQ9BVA1 445 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 CEP72Q9P209 647 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 FAN1Q9Y2M0 1017 aa9.91□□□□□ -0.82
PTPRE-202ENST00000306042 RHOXF2BP0C7M4 288 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 ANKRD40Q6AI12 368 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 OTOP1Q7RTM1 612 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 ZNF410Q86VK4 478 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 MSL3Q8N5Y2 521 aaKnown RBP9.9□□□□□ -0.82
PTPRE-202ENST00000306042 TBC1D31Q96DN5 1066 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 RHOXF2Q9BQY4 288 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 STMN4Q9H169 189 aaPredicted RBP9.9□□□□□ -0.82
PTPRE-202ENST00000306042 BTBD7Q9P203 1132 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 LSM7Q9UK45 103 aaKnown RBP9.9□□□□□ -0.82
PTPRE-202ENST00000306042 ZNF148Q9UQR1 794 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 SLU7O95391 586 aaKnown RBP9.9□□□□□ -0.82
PTPRE-202ENST00000306042 SDC4P31431 198 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 EIF4A3P38919 411 aaKnown RBP9.9□□□□□ -0.82
PTPRE-202ENST00000306042 FMR1Q06787 632 aaKnown RBP eCLIP9.9□□□□□ -0.82
PTPRE-202ENST00000306042 SNX17Q15036 470 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 STILQ15468 1287 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 METTL16Q86W50 562 aaKnown RBP9.9□□□□□ -0.82
PTPRE-202ENST00000306042 ADAMTS1Q9UHI8 967 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 KRT1P04264 644 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 ATP1A3P13637 1013 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 ELAVL2Q12926 359 aaKnown RBP9.9□□□□□ -0.82
PTPRE-202ENST00000306042 PPP2R5CQ13362 524 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 EDRF1Q3B7T1 1238 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 ALKBH5Q6P6C2 394 aaKnown RBP9.9□□□□□ -0.82
PTPRE-202ENST00000306042 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms