RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SORCS3Q9UPU3 1222 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 SMCO2A6NFE2 343 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 DEAF1O75398 565 aaPredicted RBP6.8□□□□□ -1.32
VPS35-201ENST00000299138 AKR1D1P51857 326 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 CYP27A1Q02318 531 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 LCORLQ8N3X6 602 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 DUSP9Q99956 384 aaKnown RBP6.8□□□□□ -1.32
VPS35-201ENST00000299138 TMEM206Q9H813 350 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 DSEQ9UL01 958 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 CHMP2BQ9UQN3 213 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 POC1B-GALNT4F8VUJ3 575 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 TNNC2P02585 160 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 HLA-DOAP06340 250 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 HIBADHP31937 336 aaKnown RBP6.8□□□□□ -1.32
VPS35-201ENST00000299138 PSMC2P35998 433 aaKnown RBP6.8□□□□□ -1.32
VPS35-201ENST00000299138 TSTA3Q13630 321 aaPredicted RBP6.8□□□□□ -1.32
VPS35-201ENST00000299138 KRT81Q14533 505 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 DEPDC1Q5TB30 811 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 RNF43Q68DV7 783 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 STK33Q9BYT3 514 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 KLHL25Q9H0H3 589 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 SMYD3Q9H7B4 428 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 TBC1D23Q9NUY8 699 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 FETUBQ9UGM5 382 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 DDX25Q9UHL0 483 aaKnown RBP6.8□□□□□ -1.32
VPS35-201ENST00000299138 TRPC6Q9Y210 931 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 RTCBQ9Y3I0 505 aaKnown RBP6.8□□□□□ -1.32
VPS35-201ENST00000299138 ZPR1O75312 459 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 A1BGP04217 495 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 HERC4Q5GLZ8 1057 aaPredicted RBP6.8□□□□□ -1.32
VPS35-201ENST00000299138 SPATA21Q7Z572 469 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 ZBTB10Q96DT7 871 aa6.8□□□□□ -1.32
VPS35-201ENST00000299138 SEC24DO94855 1032 aaPredicted RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 PUDPQ08623 228 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 TRIM25Q14258 630 aaKnown RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 LIN9Q5TKA1 542 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 ANKRD40Q6AI12 368 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 TMC3Q7Z5M5 1100 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 ZC3H3Q8IXZ2 948 aaKnown RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 B4GALNT2Q8NHY0 566 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 ZNF594Q96JF6 807 aaPredicted RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 TRAIPQ9BWF2 469 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 EPC1Q9H2F5 836 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 ARHGEF3Q9NR81 526 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 DNAJB4Q9UDY4 337 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 PRAMEF22A3QJZ6 481 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 SYNDIG1LA6NDD5 238 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 NQO1P15559 274 aaKnown RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 POLR2FP61218 127 aaKnown RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 ZNF844Q08AG5 666 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 LUZP2Q86TE4 346 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 DNAJC10Q8IXB1 793 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 MYL10Q9BUA6 226 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 EMILIN3Q9NT22 766 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 ZFATQ9P243 1243 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 PCYOX1Q9UHG3 505 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 ITM2BQ9Y287 266 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 CAPN6Q9Y6Q1 641 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 SPDYE16A6NNV3 312 aaPredicted RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 GOLGA8MH3BSY2 632 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 NPTXRO95502 500 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 COPS2P61201 443 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 GUCY1A3Q02108 690 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 MAPK7Q13164 816 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 LETM2Q2VYF4 491 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 SPDYE2Q495Y8 402 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 EAPPQ56P03 285 aaPredicted RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 TTMPQ5BVD1 217 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 ATG16L1Q676U5 607 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 SLFN11Q7Z7L1 901 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 GRAMD1CQ8IYS0 662 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 BAP1Q92560 729 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 ARL8AQ96BM9 186 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 DCLRE1BQ9H816 532 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 RXFP1Q9HBX9 757 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 MPP6Q9NZW5 540 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 DDX20Q9UHI6 824 aaKnown RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 ZNF536O15090 1300 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 GOLGA8CPA6NN73 597 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 USP17L12C9JPN9 530 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 USP17L21D6R901 530 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 LDHBP07195 334 aaKnown RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 OCM2P0CE71 109 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 OCMP0CE72 109 aaPredicted RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 MAPTP10636 758 aaKnown RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 RXRAP19793 462 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 CDK18Q07002 472 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 TRIM72Q6ZMU5 477 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 LRRC55Q6ZSA7 311 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 C15orf52Q6ZUT6 534 aaKnown RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 RFX8Q6ZV50 586 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 RAPH1Q70E73 1250 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 C12orf50Q8NA57 414 aaPredicted RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 OXER1Q8TDS5 423 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 NLRP3Q96P20 1036 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 OLFML3Q9NRN5 406 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 ARHGAP26Q9UNA1 814 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 PARP4Q9UKK3 1724 aaKnown RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 ZNF233A6NK53 670 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 KLRF2D3W0D1 207 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms