RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C RPL18AP0CX49 186 aaKnown RBP0.95□□□□□ -2.26
PCF11YDR228C RPL18BP0CX50 186 aaKnown RBP0.95□□□□□ -2.26
PCF11YDR228C YKL162CP36052 402 aa0.95□□□□□ -2.26
PCF11YDR228C KRE29P40026 464 aa0.95□□□□□ -2.26
PCF11YDR228C MRPL49P40858 161 aaPredicted RBP0.95□□□□□ -2.26
PCF11YDR228C CUE3P53137 624 aaKnown RBP0.95□□□□□ -2.26
PCF11YDR228C YGR168CP53293 376 aa0.95□□□□□ -2.26
PCF11YDR228C EBS1Q03466 884 aaKnown RBP0.95□□□□□ -2.26
PCF11YDR228C EMC6Q12431 108 aa0.95□□□□□ -2.26
PCF11YDR228C NOT5Q12514 560 aaPredicted RBP0.95□□□□□ -2.26
PCF11YDR228C AEP1P32493 518 aa0.95□□□□□ -2.26
PCF11YDR228C VPH1P32563 840 aaKnown RBP0.95□□□□□ -2.26
PCF11YDR228C SIF2P38262 535 aa0.95□□□□□ -2.26
PCF11YDR228C SLM2P53955 656 aa0.95□□□□□ -2.26
PCF11YDR228C YLL007CQ07799 665 aa0.95□□□□□ -2.26
PCF11YDR228C YPL150WQ12152 901 aa0.95□□□□□ -2.26
PCF11YDR228C RAD7P06779 565 aa0.94□□□□□ -2.26
PCF11YDR228C TFS1P14306 219 aa0.94□□□□□ -2.26
PCF11YDR228C ZRT1P32804 376 aa0.94□□□□□ -2.26
PCF11YDR228C MPP10P47083 593 aaKnown RBP0.94□□□□□ -2.26
PCF11YDR228C PDR16P53860 351 aaKnown RBP0.94□□□□□ -2.26
PCF11YDR228C SWT21P53873 357 aaPredicted RBP0.94□□□□□ -2.26
PCF11YDR228C PML1Q07930 204 aaPredicted RBP0.94□□□□□ -2.26
PCF11YDR228C RNR2P09938 399 aaKnown RBP0.93□□□□□ -2.26
PCF11YDR228C MSS116P15424 664 aaKnown RBP0.93□□□□□ -2.26
PCF11YDR228C UTP25P40498 721 aaKnown RBP0.93□□□□□ -2.26
PCF11YDR228C GDS1P41913 522 aa0.93□□□□□ -2.26
PCF11YDR228C YFR054CP43622 192 aa0.93□□□□□ -2.26
PCF11YDR228C MRS2Q01926 470 aa0.93□□□□□ -2.26
PCF11YDR228C STE23Q06010 1027 aa0.93□□□□□ -2.26
PCF11YDR228C YBL112CQ3E7Y4 105 aa0.93□□□□□ -2.26
PCF11YDR228C PAN1P32521 1480 aa0.93□□□□□ -2.26
PCF11YDR228C RPL31AP0C2H8 113 aaKnown RBP0.92□□□□□ -2.26
PCF11YDR228C YOR062CP36025 268 aa0.92□□□□□ -2.26
PCF11YDR228C NAS2P40555 220 aa0.92□□□□□ -2.26
PCF11YDR228C YJL016WP47072 561 aa0.92□□□□□ -2.26
PCF11YDR228C SWC4P53201 476 aa0.92□□□□□ -2.26
PCF11YDR228C PSY3Q12318 242 aa0.92□□□□□ -2.26
PCF11YDR228C ISD11Q6Q560 94 aa0.92□□□□□ -2.26
PCF11YDR228C TDH1P00360 332 aaKnown RBP0.92□□□□□ -2.26
PCF11YDR228C GAL3P13045 520 aa0.92□□□□□ -2.26
PCF11YDR228C RPL16BP26785 198 aaKnown RBP0.92□□□□□ -2.26
PCF11YDR228C AVT7P40501 490 aa0.92□□□□□ -2.26
PCF11YDR228C COG7P53195 279 aa0.92□□□□□ -2.26
PCF11YDR228C NFI1Q12216 726 aa0.92□□□□□ -2.26
PCF11YDR228C TAZ1Q06510 381 aa0.91□□□□□ -2.26
PCF11YDR228C RAD10P06838 210 aa0.9□□□□□ -2.26
PCF11YDR228C YCR102CP25608 368 aa0.9□□□□□ -2.26
PCF11YDR228C COT1P32798 439 aa0.9□□□□□ -2.26
PCF11YDR228C POP8P38208 133 aa0.9□□□□□ -2.26
PCF11YDR228C YDR089WP38966 869 aa0.9□□□□□ -2.26
PCF11YDR228C YPL039WQ03080 316 aa0.9□□□□□ -2.26
PCF11YDR228C RCF1Q03713 159 aa0.9□□□□□ -2.26
PCF11YDR228C ATG15P25641 520 aa0.9□□□□□ -2.27
PCF11YDR228C YHL026CP38740 315 aa0.9□□□□□ -2.27
PCF11YDR228C TIF34P40217 347 aaKnown RBP0.9□□□□□ -2.27
PCF11YDR228C APC9Q12107 265 aa0.9□□□□□ -2.27
PCF11YDR228C IZH4Q99393 312 aa0.9□□□□□ -2.27
PCF11YDR228C NUP157P40064 1391 aaKnown RBP0.9□□□□□ -2.27
PCF11YDR228C BMH1P29311 267 aaKnown RBP0.89□□□□□ -2.27
PCF11YDR228C KRE6P32486 720 aa0.89□□□□□ -2.27
PCF11YDR228C YHI9P38765 294 aa0.89□□□□□ -2.27
PCF11YDR228C SEN34P39707 275 aa0.89□□□□□ -2.27
PCF11YDR228C RPE1P46969 238 aa0.89□□□□□ -2.27
PCF11YDR228C YML018CQ03730 393 aa0.89□□□□□ -2.27
PCF11YDR228C LOA1Q06508 300 aa0.89□□□□□ -2.27
PCF11YDR228C YOR114WQ12219 294 aa0.89□□□□□ -2.27
PCF11YDR228C PAA1Q12447 191 aaKnown RBP0.89□□□□□ -2.27
PCF11YDR228C YPR064WQ12492 139 aa0.89□□□□□ -2.27
PCF11YDR228C ERG2P32352 222 aa0.88□□□□□ -2.27
PCF11YDR228C CSG2P35206 410 aa0.88□□□□□ -2.27
PCF11YDR228C PHO89P38361 574 aa0.88□□□□□ -2.27
PCF11YDR228C AYR1P40471 297 aa0.88□□□□□ -2.27
PCF11YDR228C YMR114CQ04471 368 aaKnown RBP0.88□□□□□ -2.27
PCF11YDR228C ECM18Q04623 453 aa0.88□□□□□ -2.27
PCF11YDR228C PBP4Q07362 185 aaKnown RBP0.88□□□□□ -2.27
PCF11YDR228C YOL019WQ08157 551 aa0.88□□□□□ -2.27
PCF11YDR228C SAM4Q08985 325 aaKnown RBP0.88□□□□□ -2.27
PCF11YDR228C SMT3Q12306 101 aaKnown RBP0.88□□□□□ -2.27
PCF11YDR228C BOL1Q3E793 110 aa0.88□□□□□ -2.27
PCF11YDR228C CAT2P32796 670 aaKnown RBP0.88□□□□□ -2.27
PCF11YDR228C SWC5P38326 303 aa0.88□□□□□ -2.27
PCF11YDR228C FET3P38993 636 aa0.88□□□□□ -2.27
PCF11YDR228C LSM4P40070 187 aaKnown RBP0.88□□□□□ -2.27
PCF11YDR228C CDC40P40968 455 aaPredicted RBP0.88□□□□□ -2.27
PCF11YDR228C YEL009C-AA0A023PZF2 135 aa0.87□□□□□ -2.27
PCF11YDR228C COS2P0CX12 379 aa0.87□□□□□ -2.27
PCF11YDR228C COS3P0CX13 379 aa0.87□□□□□ -2.27
PCF11YDR228C SCM4P32564 187 aa0.87□□□□□ -2.27
PCF11YDR228C SUA5P32579 426 aa0.87□□□□□ -2.27
PCF11YDR228C GDH2P33327 1092 aaKnown RBP0.87□□□□□ -2.27
PCF11YDR228C UIP5P36137 443 aa0.87□□□□□ -2.27
PCF11YDR228C DRE2P36152 348 aa0.87□□□□□ -2.27
PCF11YDR228C GON7P46984 123 aa0.87□□□□□ -2.27
PCF11YDR228C DPP1Q05521 289 aa0.87□□□□□ -2.27
PCF11YDR228C RRP42Q12277 265 aaPredicted RBP0.87□□□□□ -2.27
PCF11YDR228C POX1P13711 748 aa0.86□□□□□ -2.27
PCF11YDR228C PPH21P23594 369 aa0.86□□□□□ -2.27
PCF11YDR228C RPC37P36121 282 aa0.86□□□□□ -2.27
PCF11YDR228C ARN2P38724 620 aa0.86□□□□□ -2.27
Retrieved 100 of 5,963 RNA–protein pairs in 21.2 ms