RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 C3orf67Q6ZVT6 689 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ZC3H18Q86VM9 953 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 C7orf61Q8IZ16 206 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 SPARTQ8N0X7 666 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 STMN2Q93045 179 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ARHGEF26Q96DR7 871 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 CRNKL1Q9BZJ0 848 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 POFUT2Q9Y2G5 429 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 POLR2DO15514 142 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 KLHL2O95198 593 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 FGFR1P11362 822 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 SERPINB1P30740 379 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 KPNA1P52294 538 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 CEP55Q53EZ4 464 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 KANK4Q5T7N3 995 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 SCYL2Q6P3W7 929 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 IFNL2Q8IZJ0 200 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 HTRA1Q92743 480 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 OSBP2Q969R2 916 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 COL26A1Q96A83 441 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 SIPA1Q96FS4 1042 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 SEMA3GQ9NS98 782 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 PIH1D1Q9NWS0 290 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 HOXC10Q9NYD6 342 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ZNF215Q9UL58 517 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 VANGL2Q9ULK5 521 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 NCAM2O15394 837 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 AKAP8O43823 692 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 CBFA2T3O75081 653 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 HEXIM1O94992 359 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 PLCG2P16885 1265 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 SLC9A1P19634 815 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 EIF4A3P38919 411 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 GRIK4Q16099 956 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 TXNDC11Q6PKC3 985 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 LARP1Q6PKG0 1096 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 MINDY2Q8NBR6 621 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 SHC3Q92529 594 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 DAPK2Q9UIK4 370 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 NOC2LQ9Y3T9 749 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 SNX8Q9Y5X2 465 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 INSRP06213 1382 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 K7ENM7 598 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 DKC1O60832 514 aaKnown RBP eCLIP3.79□□□□□ -1.86e-8■■■■■ 53.6
SCN1A-221ENST00000641996 HAUS5O94927 633 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ATP5F1P24539 256 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 GCLCP48506 637 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 STX5Q13190 355 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 BMP2KLQ5H9B9 411 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 FRMD5Q7Z6J6 570 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 HIC2Q96JB3 615 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 KCNF1Q9H3M0 494 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 VPS28Q9UK41 221 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 SPDYE3A6NKU9 549 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 UBAP1LF5GYI3 381 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 DDAH1O94760 285 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 POLR2EP19388 210 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ITGAXP20702 1163 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 TCF7P36402 384 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 AARSP49588 968 aaKnown RBP eCLIP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 RAB14P61106 215 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 RBM6P78332 1123 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 PYHIN1Q6K0P9 492 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 CACNA2D3Q8IZS8 1091 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 PDCD6IPQ8WUM4 868 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 HAUS4Q9H6D7 363 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 PNO1Q9NRX1 252 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 GID8Q9NWU2 228 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 HMG20BQ9P0W2 317 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ZNF229Q9UJW7 825 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 KTN1Q86UP2 1357 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 GOLGA8BA8MQT2 603 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 H0YJX3 145 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ULK1O75385 1050 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 FYNP06241 537 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 KRT71Q3SY84 523 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 XRRA1Q6P2D8 792 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 LINC00469Q8N7U9 141 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ICA1LQ8NDH6 482 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ELAC2Q9BQ52 826 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ATP6V0A4Q9HBG4 840 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 NOP53Q9NZM5 478 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 SRPK3Q9UPE1 567 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 MAGEB16A2A368 324 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 GDI2P50395 445 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 GRAMD2AQ8IUY3 354 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 OR6P1Q8NGX9 317 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 SARS2Q9NP81 518 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 TYW1Q9NV66 732 aaKnown RBP3.79□□□□□ -1.8
SCN1A-221ENST00000641996 CACNA1DQ01668 2161 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 N4BP3O15049 544 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 COL6A1P12109 1028 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 GPTP24298 496 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 MAP3K10Q02779 954 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 LGALS3BPQ08380 585 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 CRY1Q16526 586 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 NDUFA5Q16718 116 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 KRT26Q7Z3Y9 468 aa3.79□□□□□ -1.8
SCN1A-221ENST00000641996 ERLEC1Q96DZ1 483 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms