RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 EHHADHQ08426 723 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 NECTIN1Q15223 517 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 KRT31Q15323 416 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 OTUD7BQ6GQQ9 843 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 C4orf22Q6V702 233 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 NOSTRINQ8IVI9 506 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 ANKRD35Q8N283 1001 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 FAM163AQ96GL9 167 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-216ENST00000637968 CARD14Q9BXL6 1004 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 MRPS26Q9BYN8 205 aaKnown RBP6.1□□□□□ -1.43
SCN1A-216ENST00000637968 ALDH8A1Q9H2A2 487 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-216ENST00000637968 SMARCAL1Q9NZC9 954 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 STX18Q9P2W9 335 aaKnown RBP6.1□□□□□ -1.43
SCN1A-216ENST00000637968 DAPK2Q9UIK4 370 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 JCADQ9P266 1359 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 CLTCL1P53675 1640 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 KANSL1LA0AUZ9 987 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 F6X3S4 739 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 PGRMC1O00264 195 aaKnown RBP6.09□□□□□ -1.43
SCN1A-216ENST00000637968 PSMA7O14818 248 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 GNPATO15228 680 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 RAD51CO43502 376 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 JAK1P23458 1154 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 TNNI2P48788 182 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 PTK2Q05397 1052 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 STX3Q13277 289 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 TAF12Q16514 161 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 SMU1Q2TAY7 513 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 RNF19BQ6ZMZ0 732 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 RGS9BPQ6ZS82 235 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 C2CD5Q86YS7 1000 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 TCAIMQ8N3R3 496 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 GATA6Q92908 595 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 KCNN1Q92952 543 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 AIFM2Q9BRQ8 373 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 ALG1Q9BT22 464 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 MLXIPQ9HAP2 919 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 DDX28Q9NUL7 540 aaKnown RBP6.09□□□□□ -1.43
SCN1A-216ENST00000637968 RIMS2Q9UQ26 1411 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 ZNF652Q9Y2D9 606 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 USP20Q9Y2K6 914 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 PDS5AQ29RF7 1337 aaKnown RBP6.09□□□□□ -1.43
SCN1A-216ENST00000637968 FUOMA2VDF0 154 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 NCK2O43639 380 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 AFPP02771 609 aaKnown RBP6.09□□□□□ -1.43
SCN1A-216ENST00000637968 SERPINB1P30740 379 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 CASP5P51878 434 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 PTK7Q13308 1070 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 LRRC36Q1X8D7 754 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 MYLK3Q32MK0 819 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 EGFLAMQ63HQ2 1017 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 DUS1LQ6P1R4 473 aaKnown RBP6.09□□□□□ -1.43
SCN1A-216ENST00000637968 KSR1Q8IVT5 923 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 NELFCDQ8IXH7 590 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 GALNT4Q8N4A0 578 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 ANKRD13CQ8N6S4 541 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 OLFM1Q99784 485 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 MMRN2Q9H8L6 949 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 VPS37BQ9H9H4 285 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 GPBP1L1Q9HC44 474 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-216ENST00000637968 RSL24D1Q9UHA3 163 aaKnown RBP6.09□□□□□ -1.43
SCN1A-216ENST00000637968 PITPNM2Q9BZ72 1349 aa6.09□□□□□ -1.43
SCN1A-216ENST00000637968 ZNF839A8K0R7 811 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 CENPBD1B2RD01 187 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 TNFAIP8O95379 198 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 CDK4P11802 303 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 ZNF18P17022 549 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 RXRGP48443 463 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 FMR1Q06787 632 aaKnown RBP eCLIP6.09□□□□□ -1.44
SCN1A-216ENST00000637968 PCSK7Q16549 785 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 SLC9C1Q4G0N8 1177 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 KRT80Q6KB66 452 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 LLGL2Q6P1M3 1020 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 RFX8Q6ZV50 586 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 FAM9CQ8IZT9 166 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 SPARTQ8N0X7 666 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 ESX1Q8N693 406 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.09□□□□□ -1.44
SCN1A-216ENST00000637968 MAP4K1Q92918 833 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 HGH1Q9BTY7 390 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 MYLK2Q9H1R3 596 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 DENND2DQ9H6A0 471 aaPredicted RBP6.09□□□□□ -1.44
SCN1A-216ENST00000637968 MLXIPLQ9NP71 852 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 SCAF8Q9UPN6 1271 aaKnown RBP6.09□□□□□ -1.44
SCN1A-216ENST00000637968 CAB39Q9Y376 341 aaPredicted RBP6.09□□□□□ -1.44
SCN1A-216ENST00000637968 PNPLA6Q8IY17 1366 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 MROH7Q68CQ1 1323 aa6.09□□□□□ -1.44
SCN1A-216ENST00000637968 POTEB3A0JP26 581 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 TRIM64A6NGJ6 449 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 TRIM64BA6NI03 449 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 CFAP99D6REC4 459 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 HOXD10P28358 340 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 MZF1P28698 734 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-216ENST00000637968 NR1H2P55055 460 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 TRPC3Q13507 836 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 TOB2Q14106 344 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-216ENST00000637968 PDK3Q15120 406 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 FOXB2Q5VYV0 432 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 POTEBQ6S5H4 581 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 HEATR4Q86WZ0 1026 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms