RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 SOS1Q07889 1333 aaPredicted RBP3.37□□□□□ -1.87
VIM-210ENST00000637053 TMEM94Q12767 1356 aa3.37□□□□□ -1.87
VIM-210ENST00000637053 CCDC66A2RUB6 948 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 B4DLN1 442 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 B4E171 279 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 F6X3S4 739 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 GIPC1O14908 333 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 FYB1O15117 783 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 KPNA6O60684 536 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 LRRN2O75325 713 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 MAFO75444 373 aaPredicted RBP3.36□□□□□ -1.87
VIM-210ENST00000637053 TADA3O75528 432 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 HSPA4LO95757 839 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 CAPNS1P04632 268 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 FERP16591 822 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 CD9P21926 228 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 TMOD1P28289 359 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 HOXC12P31275 282 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 ELF1P32519 619 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 CYP2C19P33261 490 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 MTHFRP42898 656 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 HMGA2P52926 109 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 ATXN1P54253 815 aaKnown RBP3.36□□□□□ -1.87
VIM-210ENST00000637053 SLURP1P55000 103 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 AP2B1P63010 937 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 UBXN1Q04323 297 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 LRRC14Q15048 493 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 TERF2Q15554 542 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 MEA1Q16626 185 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 WSCD2Q2TBF2 565 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 WIPI1Q5MNZ9 446 aaPredicted RBP3.36□□□□□ -1.87
VIM-210ENST00000637053 CCDC122Q5T0U0 273 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 AP1ARQ63HQ0 302 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 SCARA3Q6AZY7 606 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 DSTYKQ6XUX3 929 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 CCDC149Q6ZUS6 474 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 NEK10Q6ZWH5 1172 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 GPR155Q7Z3F1 870 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 KDELC2Q7Z4H8 507 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 GALNTL5Q7Z4T8 443 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.36□□□□□ -1.87
VIM-210ENST00000637053 ZER1Q7Z7L7 766 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 RALYLQ86SE5 291 aaKnown RBP3.36□□□□□ -1.87
VIM-210ENST00000637053 LRRTM3Q86VH5 581 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 LDHDQ86WU2 507 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 TBC1D21Q8IYX1 336 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 VPS52Q8N1B4 723 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 DCLK2Q8N568 766 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 ZNF540Q8NDQ6 660 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 ST13P5Q8NFI4 369 aaPredicted RBP3.36□□□□□ -1.87
VIM-210ENST00000637053 LRGUKQ96M69 825 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 CCDC138Q96M89 665 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 NT5C1BQ96P26 610 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 GBP4Q96PP9 640 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 TACO1Q9BSH4 297 aaKnown RBP3.36□□□□□ -1.87
VIM-210ENST00000637053 DHRS4Q9BTZ2 278 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 MMTAG2Q9BU76 263 aaKnown RBP3.36□□□□□ -1.87
VIM-210ENST00000637053 WDR12Q9GZL7 423 aaKnown RBP3.36□□□□□ -1.87
VIM-210ENST00000637053 KIAA1683Q9H0B3 1180 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 ZWILCHQ9H900 591 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 HPF1Q9NWY4 346 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 QPCTLQ9NXS2 382 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 NSMCE4AQ9NXX6 385 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 SEPT10Q9P0V9 454 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 IFT80Q9P2H3 777 aaPredicted RBP3.36□□□□□ -1.87
VIM-210ENST00000637053 FAM8A1Q9UBU6 413 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 TJP2Q9UDY2 1190 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 CFDP1Q9UEE9 299 aaPredicted RBP3.36□□□□□ -1.87
VIM-210ENST00000637053 SH3BGRL2Q9UJC5 107 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 PALD1Q9ULE6 856 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 COG5Q9UP83 839 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 GPR34Q9UPC5 381 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 ANKRD6Q9Y2G4 727 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 ANGPTL3Q9Y5C1 460 aa3.36□□□□□ -1.87
VIM-210ENST00000637053 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.36□□□□□ -1.87
VIM-210ENST00000637053 BRD4O60885 1362 aaPredicted RBP3.36□□□□□ -1.87
VIM-210ENST00000637053 ATAD2BQ9ULI0 1458 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 SHISA3A0PJX4 238 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 FAM83GA6ND36 823 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 TRIM75PA6NK02 468 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 MINDY4BA8MYZ0 360 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 F8VZ95 297 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 H0YC42 278 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 H7C0S8 307 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 SGSM2O43147 1006 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 ZBTB43O43298 467 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 XPOTO43592 962 aaKnown RBP3.35□□□□□ -1.87
VIM-210ENST00000637053 CTNND1O60716 968 aaKnown RBP3.35□□□□□ -1.87
VIM-210ENST00000637053 USO1O60763 962 aaKnown RBP3.35□□□□□ -1.87
VIM-210ENST00000637053 SNUPNO95149 360 aaKnown RBP3.35□□□□□ -1.87
VIM-210ENST00000637053 SNX4O95219 450 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 TGDSO95455 350 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 TBX18O95935 607 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 CELA3AP09093 270 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 TSPY4P0CV99 314 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 TSPY10P0CW01 314 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 THEGLP0DJG4 465 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 EEF2P13639 858 aaKnown RBP3.35□□□□□ -1.87
VIM-210ENST00000637053 RHCEP18577 417 aa3.35□□□□□ -1.87
VIM-210ENST00000637053 ALDH1B1P30837 517 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms