RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 THEGQ9P2T0 379 aa7.31□□□□□ -1.24
SCN1A-213ENST00000636759 FAM32AQ9Y421 112 aaKnown RBP7.31□□□□□ -1.24
SCN1A-213ENST00000636759 CCDC88AQ3V6T2 1871 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 FBP2O00757 339 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 ZNF263O14978 683 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 STRNO43815 780 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 PLEKP08567 350 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-213ENST00000636759 CDK4P11802 303 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 RXRBP28702 533 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 ATP5DP30049 168 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 TCF7P36402 384 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-213ENST00000636759 MED21Q13503 144 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 SPDYCQ5MJ68 293 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 RC3H1Q5TC82 1133 aaKnown RBP7.3□□□□□ -1.24
SCN1A-213ENST00000636759 APOA5Q6Q788 366 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 C4orf50Q6ZRC1 276 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 KRT27Q7Z3Y8 459 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 SH3RF1Q7Z6J0 888 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 NUP93Q8N1F7 819 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 MTMR8Q96EF0 704 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 VPS50Q96JG6 964 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 SPATA17Q96L03 361 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 INPP4AQ96PE3 977 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-213ENST00000636759 FNBP1Q96RU3 617 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 CGREF1Q99674 301 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 NACAP1Q9BZK3 213 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 KIAA1683Q9H0B3 1180 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 MLXIPLQ9NP71 852 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 SEC63Q9UGP8 760 aaKnown RBP7.3□□□□□ -1.24
SCN1A-213ENST00000636759 SRPRBQ9Y5M8 271 aaKnown RBP7.3□□□□□ -1.24
SCN1A-213ENST00000636759 A0A087X0B3 334 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 GOLGA8TH3BQL2 631 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 PGRMC1O00264 195 aaKnown RBP7.3□□□□□ -1.24
SCN1A-213ENST00000636759 HNRNPCL1O60812 293 aaKnown RBP7.3□□□□□ -1.24
SCN1A-213ENST00000636759 PSMG1O95456 288 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 OXSR1O95747 527 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-213ENST00000636759 GOLGA8HP0CJ92 632 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 SRGNP10124 158 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 PTPN4P29074 926 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 POLGP54098 1239 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-213ENST00000636759 NPY5RQ15761 445 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 VWA3BQ502W6 1294 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 TMTC3Q6ZXV5 915 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 UNC13DQ70J99 1090 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 ECHDC2Q86YB7 292 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 SCYL3Q8IZE3 742 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 MORC4Q8TE76 937 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 GAB3Q8WWW8 586 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 LPIN2Q92539 896 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 TUBGCP2Q9BSJ2 902 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 AP1M1Q9BXS5 423 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 FHDC1Q9C0D6 1143 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-213ENST00000636759 PABPC3Q9H361 631 aaKnown RBP7.3□□□□□ -1.24
SCN1A-213ENST00000636759 GREM2Q9H772 168 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 STX8Q9UNK0 236 aa7.3□□□□□ -1.24
SCN1A-213ENST00000636759 CCDC162PA2VCL2 907 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 PSMA7O14818 248 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 GPAA1O43292 621 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 PDE8AO60658 829 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 SERPINB7O75635 380 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 CAMTA2O94983 1202 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 NAT2P11245 290 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 PLCG2P16885 1265 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 ECHS1P30084 290 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 GUCY1A2P33402 732 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 NAA20P61599 178 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 RELAQ04206 551 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 FUT2Q10981 343 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 KCNMA1Q12791 1236 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 DPYDQ12882 1025 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 ITPK1Q13572 414 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 TMEM214Q6NUQ4 689 aaKnown RBP7.29□□□□□ -1.24
SCN1A-213ENST00000636759 USP49Q70CQ1 688 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 SATL1Q86VE3 508 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 ARHGAP24Q8N264 748 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 DDHD1Q8NEL9 900 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 WASF1Q92558 559 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 BLZF1Q9H2G9 400 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 ADAM7Q9H2U9 754 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 SELENONQ9NZV5 590 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 STX18Q9P2W9 335 aaKnown RBP7.29□□□□□ -1.24
SCN1A-213ENST00000636759 AMACRQ9UHK6 382 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 MTUS1Q9ULD2 1270 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 PACSIN2Q9UNF0 486 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-213ENST00000636759 PDS5AQ29RF7 1337 aaKnown RBP7.29□□□□□ -1.24
SCN1A-213ENST00000636759 UMODL1Q5DID0 1318 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 KANSL1LA0AUZ9 987 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 TMEM120BA0PK00 339 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 WNT7AO00755 349 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 TBX10O75333 385 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 BAG2O95816 211 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 NUDT17P0C025 328 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 MYBP10242 640 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 ITGA6P23229 1130 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 PCYT1AP49585 367 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 VPS41P49754 854 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 NEK3P51956 506 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 HAND2P61296 217 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 IGBP1P78318 339 aa7.29□□□□□ -1.24
SCN1A-213ENST00000636759 GIT2Q14161 759 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms