RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 GAD1Q99259 594 aa16.42■□□□□ 0.22
PNKP-218ENST00000625299 APOL6Q9BWW8 343 aa16.42■□□□□ 0.22
PNKP-218ENST00000625299 FOXQ1Q9C009 403 aa16.42■□□□□ 0.22
PNKP-218ENST00000625299 SLKQ9H2G2 1235 aaPredicted RBP16.42■□□□□ 0.22
PNKP-218ENST00000625299 NUMBLQ9Y6R0 609 aa16.42■□□□□ 0.22
PNKP-218ENST00000625299 MTCL1Q9Y4B5 1905 aaKnown RBP16.42■□□□□ 0.22
PNKP-218ENST00000625299 NID2Q14112 1375 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 ERLIN2O94905 339 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 LAMP2P13473 410 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 HOXA11P31270 313 aaPredicted RBP16.41■□□□□ 0.22
PNKP-218ENST00000625299 SCNN1GP51170 649 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 CCT2P78371 535 aaKnown RBP16.41■□□□□ 0.22
PNKP-218ENST00000625299 LAMTOR4Q0VGL1 99 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 PUM1Q14671 1186 aaKnown RBP eCLIP16.41■□□□□ 0.22
PNKP-218ENST00000625299 KIAA0319Q5VV43 1072 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 PHLDB3Q6NSJ2 640 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 DCLRE1AQ6PJP8 1040 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 B3GNT9Q6UX72 402 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 C1orf210Q8IVY1 113 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 ZNF579Q8NAF0 562 aaKnown RBP16.41■□□□□ 0.22
PNKP-218ENST00000625299 SMG8Q8ND04 991 aaKnown RBP16.41■□□□□ 0.22
PNKP-218ENST00000625299 ETNPPLQ8TBG4 499 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 RUBCNQ92622 972 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 ZFP42Q96MM3 310 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 EIF2AQ9BY44 585 aaKnown RBP16.41■□□□□ 0.22
PNKP-218ENST00000625299 NCOA5Q9HCD5 579 aaKnown RBP16.41■□□□□ 0.22
PNKP-218ENST00000625299 UBN1Q9NPG3 1134 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 IPPQ9Y573 584 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 FANCMQ8IYD8 2048 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 OTOGLQ3ZCN5 2332 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 MIA3Q5JRA6 1907 aa16.41■□□□□ 0.22
PNKP-218ENST00000625299 CEP250Q9BV73 2442 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 CACNA1IQ9P0X4 2223 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 ARL5CA6NH57 179 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 POTEMA6NI47 508 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 EML1O00423 815 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 TGM5O43548 720 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 GAS2O43903 313 aaKnown RBP16.4■□□□□ 0.22
PNKP-218ENST00000625299 LRRN2O75325 713 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 NR1I2O75469 434 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 DSG1Q02413 1049 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 HTR4Q13639 388 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 NTRK3Q16288 839 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 BLOC1S2Q6QNY1 142 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 POTEGQ6S5H5 508 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 SKAP1Q86WV1 359 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 RNF149Q8NC42 400 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 CNNM3Q8NE01 707 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 CPB2Q96IY4 423 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 RHOBTB2Q9BYZ6 727 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 C22orf23Q9BZE7 217 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 NT5C3AQ9H0P0 336 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 RNF39Q9H2S5 420 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 RXFP1Q9HBX9 757 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.4■□□□□ 0.22
PNKP-218ENST00000625299 DLGAP2Q9P1A6 1054 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 DDX25Q9UHL0 483 aaKnown RBP16.4■□□□□ 0.22
PNKP-218ENST00000625299 PCDHA4Q9UN74 947 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 HES2Q9Y543 173 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 MYH15Q9Y2K3 1946 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 NCOR2Q9Y618 2525 aa16.4■□□□□ 0.22
PNKP-218ENST00000625299 IFNAR1P17181 557 aa16.39■□□□□ 0.21
PNKP-218ENST00000625299 RPL17P18621 184 aaKnown RBP16.39■□□□□ 0.21
PNKP-218ENST00000625299 QARSP47897 775 aaKnown RBP16.39■□□□□ 0.21
PNKP-218ENST00000625299 RNF168Q8IYW5 571 aaPredicted RBP16.39■□□□□ 0.21
PNKP-218ENST00000625299 PJA1Q8NG27 643 aa16.39■□□□□ 0.21
PNKP-218ENST00000625299 COLEC11Q9BWP8 271 aa16.39■□□□□ 0.21
PNKP-218ENST00000625299 PRKD2Q9BZL6 878 aa16.39■□□□□ 0.21
PNKP-218ENST00000625299 PLEKHA4Q9H4M7 779 aa16.39■□□□□ 0.21
PNKP-218ENST00000625299 SH3GLB2Q9NR46 395 aa16.39■□□□□ 0.21
PNKP-218ENST00000625299 MIOSQ9NXC5 875 aa16.39■□□□□ 0.21
PNKP-218ENST00000625299 ZDHHC7Q9NXF8 308 aa16.39■□□□□ 0.21
PNKP-218ENST00000625299 DOCK6Q96HP0 2047 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 COL4A3Q01955 1670 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 CYP3A7-CYP3A51PA0A087WV96 503 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 SLC37A4O43826 429 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 TSPAN1O60635 241 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 DKC1O60832 514 aaKnown RBP eCLIP16.38■□□□□ 0.21
PNKP-218ENST00000625299 KINO60870 393 aaKnown RBP16.38■□□□□ 0.21
PNKP-218ENST00000625299 GLULP15104 373 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 FSHRP23945 695 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 CYP3A7P24462 503 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 RFC5P40937 340 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 DSC1Q08554 894 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 EMC2Q15006 297 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 BMP2KLQ5H9B9 411 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 FUT10Q6P4F1 479 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 TRIM22Q8IYM9 498 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 HDAC7Q8WUI4 952 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 RABGGTAQ92696 567 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 TRIM6Q9C030 488 aaPredicted RBP16.38■□□□□ 0.21
PNKP-218ENST00000625299 DHX33Q9H6R0 707 aaKnown RBP16.38■□□□□ 0.21
PNKP-218ENST00000625299 SLC2A4RGQ9NR83 387 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 SPATA6Q9NWH7 488 aaPredicted RBP16.38■□□□□ 0.21
PNKP-218ENST00000625299 WRAP73Q9P2S5 460 aaPredicted RBP16.38■□□□□ 0.21
PNKP-218ENST00000625299 ARID2Q68CP9 1835 aa16.38■□□□□ 0.21
PNKP-218ENST00000625299 ANHXE9PGG2 379 aa16.37■□□□□ 0.21
PNKP-218ENST00000625299 INO80B-WBP1J3KQ70 363 aa16.37■□□□□ 0.21
PNKP-218ENST00000625299 NCBP1Q09161 790 aaKnown RBP16.37■□□□□ 0.21
PNKP-218ENST00000625299 SNW1Q13573 536 aaKnown RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms