RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 CDCA3Q99618 268 aaPredicted RBP13.98□□□□□ -0.17
PNKP-217ENST00000625216 RAB34Q9BZG1 259 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 IGFLR1Q9H665 355 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 MINDY3Q9H8M7 445 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 NGRNQ9NPE2 291 aaKnown RBP13.98□□□□□ -0.17
PNKP-217ENST00000625216 UBN1Q9NPG3 1134 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 BMP2KQ9NSY1 1161 aaPredicted RBP13.98□□□□□ -0.17
PNKP-217ENST00000625216 KCNH3Q9ULD8 1083 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 PCDHB2Q9Y5E7 798 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 BRWD1Q9NSI6 2320 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 LOXHD1Q8IVV2 1947 aa13.98□□□□□ -0.17
PNKP-217ENST00000625216 BDP1A6H8Y1 2624 aa13.97□□□□□ -0.17
PNKP-217ENST00000625216 KINO60870 393 aaKnown RBP13.97□□□□□ -0.17
PNKP-217ENST00000625216 MED24O75448 989 aa13.97□□□□□ -0.17
PNKP-217ENST00000625216 ERLIN2O94905 339 aa13.97□□□□□ -0.17
PNKP-217ENST00000625216 CDC25AP30304 524 aa13.97□□□□□ -0.17
PNKP-217ENST00000625216 BMS1Q14692 1282 aaKnown RBP13.97□□□□□ -0.17
PNKP-217ENST00000625216 NOMO2Q5JPE7 1267 aa13.97□□□□□ -0.17
PNKP-217ENST00000625216 FAM178BQ8IXR5 827 aa13.97□□□□□ -0.17
PNKP-217ENST00000625216 PDILTQ8N807 584 aa13.97□□□□□ -0.17
PNKP-217ENST00000625216 MMTAG2Q9BU76 263 aaKnown RBP13.97□□□□□ -0.17
PNKP-217ENST00000625216 TLE6Q9H808 572 aa13.97□□□□□ -0.17
PNKP-217ENST00000625216 KANSL3Q9P2N6 904 aa13.97□□□□□ -0.17
PNKP-217ENST00000625216 HCSTQ9UBK5 93 aa13.97□□□□□ -0.17
PNKP-217ENST00000625216 PRKAG3Q9UGI9 489 aa13.97□□□□□ -0.17
PNKP-217ENST00000625216 MYO7AQ13402 2215 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 CNTNAP2Q9UHC6 1331 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 SYCE3A1L190 88 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 INO80B-WBP1J3KQ70 363 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 FSCN2O14926 492 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 ACTN4O43707 911 aaKnown RBP13.96□□□□□ -0.17
PNKP-217ENST00000625216 OFD1O75665 1012 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 GLRA2P23416 452 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 NRIP1P48552 1158 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 ZNF445P59923 1031 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 ERVFC1P60507 584 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 CAPSQ13938 189 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 CAMK4Q16566 473 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 NOTUMQ6P988 496 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 KRBA2Q6ZNG9 492 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 RBM43Q6ZSC3 357 aaKnown RBP13.96□□□□□ -0.17
PNKP-217ENST00000625216 SLC39A11Q8N1S5 342 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 ASAP3Q8TDY4 903 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 AK8Q96MA6 479 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 CCSER1Q9C0I3 900 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 STK39Q9UEW8 545 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 LRWD1Q9UFC0 647 aa13.96□□□□□ -0.17
PNKP-217ENST00000625216 NLRC5Q86WI3 1866 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 ARHGEF35A5YM69 484 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 POLR2DO15514 142 aaKnown RBP13.95□□□□□ -0.18
PNKP-217ENST00000625216 TSPAN1O60635 241 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 USO1O60763 962 aaKnown RBP13.95□□□□□ -0.18
PNKP-217ENST00000625216 CSPG5O95196 566 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 IL9P15248 144 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 CYP11B2P19099 503 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 GTF2F1P35269 517 aaKnown RBP eCLIP13.95□□□□□ -0.18
PNKP-217ENST00000625216 CCT6AP40227 531 aaKnown RBP13.95□□□□□ -0.18
PNKP-217ENST00000625216 NDUFV1P49821 464 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 BCAR1P56945 870 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 RNASELQ05823 741 aaKnown RBP13.95□□□□□ -0.18
PNKP-217ENST00000625216 MBTD1Q05BQ5 628 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 KARSQ15046 597 aaKnown RBP13.95□□□□□ -0.18
PNKP-217ENST00000625216 E2F4Q16254 413 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 LONRF3Q496Y0 759 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 UBXN11Q5T124 520 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 AGMOQ6ZNB7 445 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 TMC7Q7Z402 723 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 ADGRD2Q7Z7M1 963 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 RBM23Q86U06 439 aaKnown RBP13.95□□□□□ -0.18
PNKP-217ENST00000625216 CABP7Q86V35 215 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 GJD3Q8N144 294 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 URGCPQ8TCY9 931 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 LRRC15Q8TF66 581 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 LPPQ93052 612 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 DHX58Q96C10 678 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 TMEM169Q96HH4 297 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 MSLNLQ96KJ4 702 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 TIGD1Q96MW7 591 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 PANK2Q9BZ23 570 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 POLR3FQ9H1D9 316 aaPredicted RBP13.95□□□□□ -0.18
PNKP-217ENST00000625216 TNMDQ9H2S6 317 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 SERTAD1Q9UHV2 236 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 CD207Q9UJ71 328 aa13.95□□□□□ -0.18
PNKP-217ENST00000625216 A0A087WWV3 80 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 LINC01565O15544 149 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 EYA4O95677 639 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 ITGA4P13612 1032 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 TXLNAP40222 546 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 DLX2Q07687 328 aaPredicted RBP13.94□□□□□ -0.18
PNKP-217ENST00000625216 SMAD4Q13485 552 aaKnown RBP13.94□□□□□ -0.18
PNKP-217ENST00000625216 SMAD2Q15796 467 aaKnown RBP13.94□□□□□ -0.18
PNKP-217ENST00000625216 AMHR2Q16671 573 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 DUSP6Q16828 381 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 POTEGQ6S5H5 508 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 PADI6Q6TGC4 694 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 HACE1Q8IYU2 909 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 MRPL43Q8N983 215 aaKnown RBP13.94□□□□□ -0.18
PNKP-217ENST00000625216 PRIMPOLQ96LW4 560 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 TCF25Q9BQ70 676 aa13.94□□□□□ -0.18
PNKP-217ENST00000625216 C1QTNF1Q9BXJ1 281 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms