RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 LIG4P49917 911 aa12.82□□□□□ -0.36
PDPN-211ENST00000617617 CRYBB1P53674 252 aaPredicted RBP12.82□□□□□ -0.36
PDPN-211ENST00000617617 GSDMDP57764 484 aa12.82□□□□□ -0.36
PDPN-211ENST00000617617 PTK7Q13308 1070 aa12.82□□□□□ -0.36
PDPN-211ENST00000617617 CCDC40Q4G0X9 1142 aa12.82□□□□□ -0.36
PDPN-211ENST00000617617 GPD1LQ8N335 351 aa12.82□□□□□ -0.36
PDPN-211ENST00000617617 CBWD1Q9BRT8 395 aa12.82□□□□□ -0.36
PDPN-211ENST00000617617 EDEM3Q9BZQ6 932 aa12.82□□□□□ -0.36
PDPN-211ENST00000617617 AKT3Q9Y243 479 aa12.82□□□□□ -0.36
PDPN-211ENST00000617617 SQORQ9Y6N5 450 aa12.82□□□□□ -0.36
PDPN-211ENST00000617617 CLIC2O15247 247 aa12.81□□□□□ -0.36
PDPN-211ENST00000617617 SFPQP23246 707 aaKnown RBP eCLIP12.81□□□□□ -0.36
PDPN-211ENST00000617617 MGAT3Q09327 533 aa12.81□□□□□ -0.36
PDPN-211ENST00000617617 GDF6Q6KF10 455 aaPredicted RBP12.81□□□□□ -0.36
PDPN-211ENST00000617617 SLC35C1Q96A29 364 aa12.81□□□□□ -0.36
PDPN-211ENST00000617617 NUP58Q9BVL2 599 aa12.81□□□□□ -0.36
PDPN-211ENST00000617617 GCOM2Q9BZD3 368 aaPredicted RBP12.81□□□□□ -0.36
PDPN-211ENST00000617617 TSKSQ9UJT2 592 aa12.81□□□□□ -0.36
PDPN-211ENST00000617617 A0A087WZ62 844 aa12.81□□□□□ -0.36
PDPN-211ENST00000617617 STX10O60499 249 aa12.81□□□□□ -0.36
PDPN-211ENST00000617617 ADRB2P07550 413 aa12.81□□□□□ -0.36
PDPN-211ENST00000617617 SRGAP2CP0DJJ0 459 aa12.81□□□□□ -0.36
PDPN-211ENST00000617617 DARSP14868 501 aaKnown RBP12.81□□□□□ -0.36
PDPN-211ENST00000617617 CASP4P49662 377 aa12.81□□□□□ -0.36
PDPN-211ENST00000617617 BFSP1Q12934 665 aa12.81□□□□□ -0.36
PDPN-211ENST00000617617 CCDC51Q96ER9 411 aa12.81□□□□□ -0.36
PDPN-211ENST00000617617 FDXACB1Q9BRP7 624 aaPredicted RBP12.81□□□□□ -0.36
PDPN-211ENST00000617617 UNC93B1Q9H1C4 597 aa12.81□□□□□ -0.36
PDPN-211ENST00000617617 IKZF4Q9H2S9 585 aa12.81□□□□□ -0.36
PDPN-211ENST00000617617 SIK3Q9Y2K2 1263 aa12.81□□□□□ -0.36
PDPN-211ENST00000617617 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.81□□□□□ -0.36
PDPN-211ENST00000617617 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.81□□□□□ -0.36
PDPN-211ENST00000617617 A0A0U1RQG5 324 aaPredicted RBP12.8□□□□□ -0.36
PDPN-211ENST00000617617 A0A1W2PQJ5 194 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 TEX33O43247 280 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 EXOC3O60645 756 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 CTCFP49711 727 aaPredicted RBP12.8□□□□□ -0.36
PDPN-211ENST00000617617 ITGA7Q13683 1181 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 TRIM71Q2Q1W2 868 aaKnown RBP12.8□□□□□ -0.36
PDPN-211ENST00000617617 SLC9C1Q4G0N8 1177 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 FKBP15Q5T1M5 1219 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 MPZL3Q6UWV2 235 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 RSPH3Q86UC2 560 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 ZNF333Q96JL9 665 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 HAPLN2Q9GZV7 340 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 VPS16Q9H269 839 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 FBXL5Q9UKA1 691 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 A0A1W2PQ45 241 aaPredicted RBP12.8□□□□□ -0.36
PDPN-211ENST00000617617 A0A1W2PQY0 241 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 N4BP1O75113 896 aaKnown RBP12.8□□□□□ -0.36
PDPN-211ENST00000617617 AFPP02771 609 aaKnown RBP12.8□□□□□ -0.36
PDPN-211ENST00000617617 VTNP04004 478 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 IQCF3P0C7M6 154 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 MCF2P10911 925 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 CDK7P50613 346 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 PLCB2Q00722 1185 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 PRPF4BQ13523 1007 aaKnown RBP12.8□□□□□ -0.36
PDPN-211ENST00000617617 USP37Q86T82 979 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 ZBTB10Q96DT7 871 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 NLRP4Q96MN2 994 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 MINDY3Q9H8M7 445 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 CCL5P13501 91 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 FECHP22830 423 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 NLRP11P59045 1033 aaKnown RBP12.8□□□□□ -0.36
PDPN-211ENST00000617617 MRPS6P82932 125 aaKnown RBP12.8□□□□□ -0.36
PDPN-211ENST00000617617 UBXN1Q04323 297 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 CYP24A1Q07973 514 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 PSMD6Q15008 389 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 SNRNP35Q16560 246 aaKnown RBP12.8□□□□□ -0.36
PDPN-211ENST00000617617 HSP90AA4PQ58FG1 418 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 C1orf53Q5VUE5 145 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 CRELD2Q6UXH1 353 aaPredicted RBP12.8□□□□□ -0.36
PDPN-211ENST00000617617 SH3TC2Q8TF17 1288 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 POMGNT1Q8WZA1 660 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 BICD1Q96G01 975 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 GLT1D1Q96MS3 346 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 TARS2Q9BW92 718 aaKnown RBP12.8□□□□□ -0.36
PDPN-211ENST00000617617 TTYH3Q9C0H2 523 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 PLCB1Q9NQ66 1216 aa12.8□□□□□ -0.36
PDPN-211ENST00000617617 AGO2Q9UKV8 859 aaKnown RBP12.8□□□□□ -0.36
PDPN-211ENST00000617617 A0A1B0GUA9 196 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 TISP43B9A030 160 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 KBTBD13C9JR72 458 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 TSPAN1O60635 241 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 GJB1P08034 283 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 CYP2J2P51589 502 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 KCNH2Q12809 1159 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 ATF7IP2Q5U623 682 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 CEP135Q66GS9 1140 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 DPY19L2P1Q6NXN4 242 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 APBB1IPQ7Z5R6 666 aaPredicted RBP12.79□□□□□ -0.36
PDPN-211ENST00000617617 ANKLE1Q8NAG6 615 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 CCDC150Q8NCX0 1101 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 NLRP7Q8WX94 980 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 CELF4Q9BZC1 486 aaKnown RBP12.79□□□□□ -0.36
PDPN-211ENST00000617617 TRPV2Q9Y5S1 764 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 OGTO15294 1046 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 KRT13P13646 458 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 VAMP7P51809 220 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 NOLC1Q14978 699 aaKnown RBP eCLIP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms