RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 LARP6Q9BRS8 491 aaKnown RBP19.85■□□□□ 0.77
SHKBP1-227ENST00000602011 NFKBIZQ9BYH8 718 aa19.85■□□□□ 0.77
SHKBP1-227ENST00000602011 ORC3Q9UBD5 711 aaPredicted RBP19.85■□□□□ 0.77
SHKBP1-227ENST00000602011 SPDYE4A6NLX3 237 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 MEIS3P2A8K0S8 358 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 NRP1O14786 923 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 DDHD2O94830 711 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 SLITRK3O94933 977 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 ADH1AP07327 375 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 KRT2P35908 639 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 CLCN4P51793 760 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 CLCN5P51795 746 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 UBXN11Q5T124 520 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 NCAPH2Q6IBW4 605 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 CCDC149Q6ZUS6 474 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 ASCL5Q7RTU5 278 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 TPH2Q8IWU9 490 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 ZNF579Q8NAF0 562 aaKnown RBP19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 HSD17B14Q9BPX1 270 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 MINDY3Q9H8M7 445 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 RGL1Q9NZL6 768 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 WRAP73Q9P2S5 460 aaPredicted RBP19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 LIMD1Q9UGP4 676 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 GIT1Q9Y2X7 761 aa19.84■□□□□ 0.77
SHKBP1-227ENST00000602011 GALR2O43603 387 aaPredicted RBP19.83■□□□□ 0.77
SHKBP1-227ENST00000602011 URODP06132 367 aa19.83■□□□□ 0.77
SHKBP1-227ENST00000602011 CNPP09543 421 aaKnown RBP19.83■□□□□ 0.77
SHKBP1-227ENST00000602011 SPIRE1Q08AE8 756 aa19.83■□□□□ 0.77
SHKBP1-227ENST00000602011 TMC5Q6UXY8 1006 aa19.83■□□□□ 0.77
SHKBP1-227ENST00000602011 BCL7CQ8WUZ0 217 aaPredicted RBP19.83■□□□□ 0.77
SHKBP1-227ENST00000602011 DYDC2Q96IM9 177 aa19.83■□□□□ 0.77
SHKBP1-227ENST00000602011 RPS6KC1Q96S38 1066 aa19.83■□□□□ 0.77
SHKBP1-227ENST00000602011 COLEC11Q9BWP8 271 aa19.83■□□□□ 0.77
SHKBP1-227ENST00000602011 CSRNP2Q9H175 543 aa19.83■□□□□ 0.77
SHKBP1-227ENST00000602011 IGSF9Q9P2J2 1179 aa19.83■□□□□ 0.77
SHKBP1-227ENST00000602011 ZMYM2Q9UBW7 1377 aa19.83■□□□□ 0.76
SHKBP1-227ENST00000602011 DMDP11532 3685 aa19.82■□□□□ 0.76
SHKBP1-227ENST00000602011 POMCP01189 267 aa19.82■□□□□ 0.76
SHKBP1-227ENST00000602011 POTEDQ86YR6 584 aa19.82■□□□□ 0.76
SHKBP1-227ENST00000602011 COLGALT2Q8IYK4 626 aa19.82■□□□□ 0.76
SHKBP1-227ENST00000602011 STAMQ92783 540 aa19.82■□□□□ 0.76
SHKBP1-227ENST00000602011 NXPE3Q969Y0 559 aa19.82■□□□□ 0.76
SHKBP1-227ENST00000602011 CCDC43Q96MW1 224 aaKnown RBP19.82■□□□□ 0.76
SHKBP1-227ENST00000602011 EIF2AK1Q9BQI3 630 aaKnown RBP19.82■□□□□ 0.76
SHKBP1-227ENST00000602011 HERC2P3Q9BVR0 1158 aa19.82■□□□□ 0.76
SHKBP1-227ENST00000602011 VN1R3Q9BXE9 311 aa19.82■□□□□ 0.76
SHKBP1-227ENST00000602011 TRIM6Q9C030 488 aaPredicted RBP19.82■□□□□ 0.76
SHKBP1-227ENST00000602011 RXFP1Q9HBX9 757 aa19.82■□□□□ 0.76
SHKBP1-227ENST00000602011 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.82■□□□□ 0.76
SHKBP1-227ENST00000602011 TPCN1Q9ULQ1 816 aa19.82■□□□□ 0.76
SHKBP1-227ENST00000602011 IPPQ9Y573 584 aa19.82■□□□□ 0.76
SHKBP1-227ENST00000602011 SPTBN4Q9H254 2564 aa19.81■□□□□ 0.76
SHKBP1-227ENST00000602011 ARL5CA6NH57 179 aa19.81■□□□□ 0.76
SHKBP1-227ENST00000602011 PROB1E7EW31 1015 aa19.81■□□□□ 0.76
SHKBP1-227ENST00000602011 INO80B-WBP1J3KQ70 363 aa19.81■□□□□ 0.76
SHKBP1-227ENST00000602011 DSC1Q08554 894 aa19.81■□□□□ 0.76
SHKBP1-227ENST00000602011 TDGQ13569 410 aa19.81■□□□□ 0.76
SHKBP1-227ENST00000602011 CTTNQ14247 550 aaKnown RBP19.81■□□□□ 0.76
SHKBP1-227ENST00000602011 ASTLQ6HA08 431 aaPredicted RBP19.81■□□□□ 0.76
SHKBP1-227ENST00000602011 SMG8Q8ND04 991 aaKnown RBP19.81■□□□□ 0.76
SHKBP1-227ENST00000602011 OXER1Q8TDS5 423 aa19.81■□□□□ 0.76
SHKBP1-227ENST00000602011 MFSD1Q9H3U5 465 aa19.81■□□□□ 0.76
SHKBP1-227ENST00000602011 PLEKHA4Q9H4M7 779 aa19.81■□□□□ 0.76
SHKBP1-227ENST00000602011 RIF1Q5UIP0 2472 aaKnown RBP19.8■□□□□ 0.76
SHKBP1-227ENST00000602011 TSPAN1O60635 241 aa19.8■□□□□ 0.76
SHKBP1-227ENST00000602011 ARL2P36404 184 aa19.8■□□□□ 0.76
SHKBP1-227ENST00000602011 OR1G1P47890 313 aa19.8■□□□□ 0.76
SHKBP1-227ENST00000602011 GLUD2P49448 558 aa19.8■□□□□ 0.76
SHKBP1-227ENST00000602011 CYP4A11Q02928 519 aa19.8■□□□□ 0.76
SHKBP1-227ENST00000602011 CREMQ03060 361 aa19.8■□□□□ 0.76
SHKBP1-227ENST00000602011 CALCRLQ16602 461 aa19.8■□□□□ 0.76
SHKBP1-227ENST00000602011 RNF168Q8IYW5 571 aaPredicted RBP19.8■□□□□ 0.76
SHKBP1-227ENST00000602011 TTC12Q9H892 705 aaPredicted RBP19.8■□□□□ 0.76
SHKBP1-227ENST00000602011 VPS13AQ96RL7 3174 aa19.79■□□□□ 0.76
SHKBP1-227ENST00000602011 B4GALT3O60512 393 aa19.79■□□□□ 0.76
SHKBP1-227ENST00000602011 PAPLNO95428 1278 aa19.79■□□□□ 0.76
SHKBP1-227ENST00000602011 EFEMP2O95967 443 aa19.79■□□□□ 0.76
SHKBP1-227ENST00000602011 AFF1P51825 1210 aaKnown RBP19.79■□□□□ 0.76
SHKBP1-227ENST00000602011 AK2P54819 239 aa19.79■□□□□ 0.76
SHKBP1-227ENST00000602011 DSG1Q02413 1049 aa19.79■□□□□ 0.76
SHKBP1-227ENST00000602011 TRIM29Q14134 588 aa19.79■□□□□ 0.76
SHKBP1-227ENST00000602011 KIAA0319Q5VV43 1072 aa19.79■□□□□ 0.76
SHKBP1-227ENST00000602011 TNFRSF25Q93038 417 aa19.79■□□□□ 0.76
SHKBP1-227ENST00000602011 PRIMPOLQ96LW4 560 aa19.79■□□□□ 0.76
SHKBP1-227ENST00000602011 GAD1Q99259 594 aa19.79■□□□□ 0.76
SHKBP1-227ENST00000602011 XPNPEP1Q9NQW7 623 aa19.79■□□□□ 0.76
SHKBP1-227ENST00000602011 CHST7Q9NS84 486 aa19.79■□□□□ 0.76
SHKBP1-227ENST00000602011 A0A1B0GUA9 196 aa19.78■□□□□ 0.76
SHKBP1-227ENST00000602011 CTDNEP1O95476 244 aa19.78■□□□□ 0.76
SHKBP1-227ENST00000602011 GLUD1P00367 558 aa19.78■□□□□ 0.76
SHKBP1-227ENST00000602011 USP41Q3LFD5 358 aa19.78■□□□□ 0.76
SHKBP1-227ENST00000602011 SLC27A1Q6PCB7 646 aa19.78■□□□□ 0.76
SHKBP1-227ENST00000602011 WDR6Q9NNW5 1121 aaKnown RBP19.78■□□□□ 0.76
SHKBP1-227ENST00000602011 FNIP2Q9P278 1114 aa19.78■□□□□ 0.76
SHKBP1-227ENST00000602011 PRR23AA6NEV1 266 aa19.77■□□□□ 0.76
SHKBP1-227ENST00000602011 ZBTB39O15060 712 aa19.77■□□□□ 0.76
SHKBP1-227ENST00000602011 TEX28O15482 410 aa19.77■□□□□ 0.76
SHKBP1-227ENST00000602011 NEMFO60524 1076 aa19.77■□□□□ 0.76
SHKBP1-227ENST00000602011 SSBP05455 408 aaKnown RBP eCLIP19.77■□□□□ 0.76
SHKBP1-227ENST00000602011 FDPSP14324 419 aaKnown RBP19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms