RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 FAM13BQ9NYF5 915 aa21.31■■□□□ 1
UPF1-212ENST00000601689 PLAGL2Q9UPG8 496 aa21.31■■□□□ 1
UPF1-212ENST00000601689 GIT1Q9Y2X7 761 aa21.31■■□□□ 1
UPF1-212ENST00000601689 IPPQ9Y573 584 aa21.31■■□□□ 1
UPF1-212ENST00000601689 CHD9Q3L8U1 2897 aa21.31■■□□□ 1
UPF1-212ENST00000601689 PRRC2BQ5JSZ5 2229 aaKnown RBP21.31■■□□□ 1
UPF1-212ENST00000601689 KIAA1671Q9BY89 1806 aa21.3■■□□□ 1
UPF1-212ENST00000601689 SFI1A8K8P3 1242 aa21.3■■□□□ 1
UPF1-212ENST00000601689 B4GALT5O43286 388 aa21.3■■□□□ 1
UPF1-212ENST00000601689 NR1I2O75469 434 aa21.3■■□□□ 1
UPF1-212ENST00000601689 OFD1O75665 1012 aa21.3■■□□□ 1
UPF1-212ENST00000601689 NPTXRO95502 500 aa21.3■■□□□ 1
UPF1-212ENST00000601689 UBXN11Q5T124 520 aa21.3■■□□□ 1
UPF1-212ENST00000601689 MYCT1Q8N699 235 aa21.3■■□□□ 1
UPF1-212ENST00000601689 COLGALT1Q8NBJ5 622 aa21.3■■□□□ 1
UPF1-212ENST00000601689 RPS6KC1Q96S38 1066 aa21.3■■□□□ 1
UPF1-212ENST00000601689 PYM1Q9BRP8 204 aaKnown RBP21.3■■□□□ 1
UPF1-212ENST00000601689 NTPCRQ9BSD7 190 aaKnown RBP21.3■■□□□ 1
UPF1-212ENST00000601689 KIFC3Q9BVG8 833 aa21.3■■□□□ 1
UPF1-212ENST00000601689 APOL6Q9BWW8 343 aa21.3■■□□□ 1
UPF1-212ENST00000601689 PARVGQ9HBI0 331 aa21.3■■□□□ 1
UPF1-212ENST00000601689 CHD7Q9P2D1 2997 aa21.3■■□□□ 1
UPF1-212ENST00000601689 PARP2Q9UGN5 583 aa21.3■■□□□ 1
UPF1-212ENST00000601689 BRD1O95696 1058 aa21.29■■□□□ 1
UPF1-212ENST00000601689 AMPD3Q01432 767 aa21.29■■□□□ 1
UPF1-212ENST00000601689 ATF7IP2Q5U623 682 aa21.29■■□□□ 1
UPF1-212ENST00000601689 KCNT2Q6UVM3 1135 aa21.29■■□□□ 1
UPF1-212ENST00000601689 MICAL1Q8TDZ2 1067 aa21.29■■□□□ 1
UPF1-212ENST00000601689 TCHPQ9BT92 498 aa21.29■■□□□ 1
UPF1-212ENST00000601689 EIF2AQ9BY44 585 aaKnown RBP21.29■■□□□ 1
UPF1-212ENST00000601689 CCDC113Q9H0I3 377 aa21.29■■□□□ 1
UPF1-212ENST00000601689 NSUN3Q9H649 340 aaKnown RBP21.29■■□□□ 1
UPF1-212ENST00000601689 CWH43Q9H720 699 aa21.29■■□□□ 1
UPF1-212ENST00000601689 ALG13Q9NP73 1137 aaKnown RBP21.29■■□□□ 1
UPF1-212ENST00000601689 BLOC1S4Q9NUP1 217 aa21.29■■□□□ 1
UPF1-212ENST00000601689 RNF19AQ9NV58 838 aa21.29■■□□□ 1
UPF1-212ENST00000601689 STK39Q9UEW8 545 aa21.29■■□□□ 1
UPF1-212ENST00000601689 COL6A3P12111 3177 aa21.29■■□□□ 1
UPF1-212ENST00000601689 SLC16A4O15374 487 aa21.28■■□□□ 1
UPF1-212ENST00000601689 NCK2O43639 380 aa21.28■■□□□ 1
UPF1-212ENST00000601689 ZC3H11AO75152 810 aaKnown RBP eCLIP21.28■■□□□ 1
UPF1-212ENST00000601689 FGF18O76093 207 aa21.28■■□□□ 1
UPF1-212ENST00000601689 LINC00271P0C7V0 271 aa21.28■■□□□ 1
UPF1-212ENST00000601689 NUCB2P80303 420 aa21.28■■□□□ 1
UPF1-212ENST00000601689 DNM1Q05193 864 aaKnown RBP21.28■■□□□ 1
UPF1-212ENST00000601689 PKP1Q13835 747 aa21.28■■□□□ 1
UPF1-212ENST00000601689 AAK1Q2M2I8 961 aa21.28■■□□□ 1
UPF1-212ENST00000601689 PDE12Q6L8Q7 609 aaKnown RBP21.28■■□□□ 1
UPF1-212ENST00000601689 AGMOQ6ZNB7 445 aa21.28■■□□□ 1
UPF1-212ENST00000601689 USP49Q70CQ1 688 aa21.28■■□□□ 1
UPF1-212ENST00000601689 DAW1Q8N136 415 aa21.28■■□□□ 1
UPF1-212ENST00000601689 POF1BQ8WVV4 589 aa21.28■■□□□ 1
UPF1-212ENST00000601689 TMEM169Q96HH4 297 aa21.28■■□□□ 1
UPF1-212ENST00000601689 REEP2Q9BRK0 252 aa21.28■■□□□ 1
UPF1-212ENST00000601689 CUEDC2Q9H467 287 aa21.28■■□□□ 1
UPF1-212ENST00000601689 SPG21Q9NZD8 308 aa21.28■■□□□ 1
UPF1-212ENST00000601689 ARHGAP28Q9P2N2 729 aa21.28■■□□□ 1
UPF1-212ENST00000601689 COG5Q9UP83 839 aa21.28■■□□□ 1
UPF1-212ENST00000601689 GRM6O15303 877 aa21.27■■□□□ 1
UPF1-212ENST00000601689 ALDH2P05091 517 aa21.27■■□□□ 1
UPF1-212ENST00000601689 ITGB1P05556 798 aa21.27■■□□□ 1
UPF1-212ENST00000601689 MAPK7Q13164 816 aa21.27■■□□□ 1
UPF1-212ENST00000601689 ARSHQ5FYA8 562 aa21.27■■□□□ 1
UPF1-212ENST00000601689 LRRC55Q6ZSA7 311 aa21.27■■□□□ 1
UPF1-212ENST00000601689 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.27■■□□□ 1
UPF1-212ENST00000601689 FAM178BQ8IXR5 827 aa21.27■■□□□ 1
UPF1-212ENST00000601689 IQUBQ8NA54 791 aa21.27■■□□□ 1
UPF1-212ENST00000601689 SMG8Q8ND04 991 aaKnown RBP21.27■■□□□ 1
UPF1-212ENST00000601689 BICD1Q96G01 975 aa21.27■■□□□ 1
UPF1-212ENST00000601689 GBP3Q9H0R5 595 aa21.27■■□□□ 1
UPF1-212ENST00000601689 PDZD7Q9H5P4 517 aa21.27■■□□□ 1
UPF1-212ENST00000601689 TBC1D13Q9NVG8 400 aa21.27■■□□□ 1
UPF1-212ENST00000601689 THEGQ9P2T0 379 aa21.27■■□□□ 1
UPF1-212ENST00000601689 LZTS1Q9Y250 596 aa21.27■■□□□ 1
UPF1-212ENST00000601689 TNFSF13BQ9Y275 285 aa21.27■■□□□ 1
UPF1-212ENST00000601689 TDRD15B5MCY1 1934 aaKnown RBP21.27■■□□□ 1
UPF1-212ENST00000601689 ZMYM2Q9UBW7 1377 aa21.26■□□□□ 0.99
UPF1-212ENST00000601689 TRAK2O60296 914 aa21.26■□□□□ 0.99
UPF1-212ENST00000601689 MATR3P43243 847 aaKnown RBP eCLIP21.26■□□□□ 0.99
UPF1-212ENST00000601689 BCAR1P56945 870 aa21.26■□□□□ 0.99
UPF1-212ENST00000601689 PLCB3Q01970 1234 aa21.26■□□□□ 0.99
UPF1-212ENST00000601689 CACNB1Q02641 598 aaPredicted RBP21.26■□□□□ 0.99
UPF1-212ENST00000601689 GIT2Q14161 759 aa21.26■□□□□ 0.99
UPF1-212ENST00000601689 CDR2LQ86X02 465 aaPredicted RBP21.26■□□□□ 0.99
UPF1-212ENST00000601689 PDILTQ8N807 584 aa21.26■□□□□ 0.99
UPF1-212ENST00000601689 SPPL3Q8TCT6 385 aa21.26■□□□□ 0.99
UPF1-212ENST00000601689 MRPS27Q92552 414 aaKnown RBP21.26■□□□□ 0.99
UPF1-212ENST00000601689 SPATA32Q96LK8 384 aa21.26■□□□□ 0.99
UPF1-212ENST00000601689 PANK2Q9BZ23 570 aa21.26■□□□□ 0.99
UPF1-212ENST00000601689 SCAND2PQ9GZW5 306 aaPredicted RBP21.26■□□□□ 0.99
UPF1-212ENST00000601689 TLR9Q9NR96 1032 aa21.26■□□□□ 0.99
UPF1-212ENST00000601689 NPHP3-ACAD11A0A0J9YXS1 232 aa21.25■□□□□ 0.99
UPF1-212ENST00000601689 FSD2A1L4K1 749 aa21.25■□□□□ 0.99
UPF1-212ENST00000601689 ARL5CA6NH57 179 aa21.25■□□□□ 0.99
UPF1-212ENST00000601689 K7ENM7 598 aa21.25■□□□□ 0.99
UPF1-212ENST00000601689 POMCP01189 267 aa21.25■□□□□ 0.99
UPF1-212ENST00000601689 YARSP54577 528 aaKnown RBP21.25■□□□□ 0.99
UPF1-212ENST00000601689 TMEM87AQ8NBN3 555 aa21.25■□□□□ 0.99
UPF1-212ENST00000601689 GAD1Q99259 594 aa21.25■□□□□ 0.99
UPF1-212ENST00000601689 TMEM175Q9BSA9 504 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms