RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 ECHDC2Q86YB7 292 aa15.76■□□□□ 0.11
VRK3-213ENST00000597215 HPS3Q969F9 1004 aa15.76■□□□□ 0.11
VRK3-213ENST00000597215 TOP1MTQ969P6 601 aa15.76■□□□□ 0.11
VRK3-213ENST00000597215 ACCSQ96QU6 501 aa15.76■□□□□ 0.11
VRK3-213ENST00000597215 ACO2Q99798 780 aaKnown RBP15.76■□□□□ 0.11
VRK3-213ENST00000597215 TARS2Q9BW92 718 aaKnown RBP15.76■□□□□ 0.11
VRK3-213ENST00000597215 STRA6Q9BX79 667 aa15.76■□□□□ 0.11
VRK3-213ENST00000597215 TRIM6Q9C030 488 aaPredicted RBP15.76■□□□□ 0.11
VRK3-213ENST00000597215 PDZD7Q9H5P4 517 aa15.76■□□□□ 0.11
VRK3-213ENST00000597215 ELAC1Q9H777 363 aaKnown RBP15.76■□□□□ 0.11
VRK3-213ENST00000597215 LRFN2Q9ULH4 789 aa15.76■□□□□ 0.11
VRK3-213ENST00000597215 EXOC7Q9UPT5 735 aa15.76■□□□□ 0.11
VRK3-213ENST00000597215 TNFSF13BQ9Y275 285 aa15.76■□□□□ 0.11
VRK3-213ENST00000597215 USP20Q9Y2K6 914 aa15.76■□□□□ 0.11
VRK3-213ENST00000597215 UBE4BO95155 1302 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 HNRNPDLO14979 420 aaKnown RBP15.75■□□□□ 0.11
VRK3-213ENST00000597215 ZNF623O75123 536 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 RHOBTB3O94955 611 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 MBD3O95983 291 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 PIGRP01833 764 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 IBSPP21815 317 aaPredicted RBP15.75■□□□□ 0.11
VRK3-213ENST00000597215 LIG4P49917 911 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 DCAF4L1Q3SXM0 396 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 UBXN11Q5T124 520 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 HERC6Q8IVU3 1022 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 SMARCE1Q969G3 411 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 GSDMAQ96QA5 445 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 FGFBP2Q9BYJ0 223 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 SLC39A2Q9NP94 309 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 RMND1Q9NWS8 449 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 TMEM161AQ9NX61 479 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 PCDHB7Q9Y5E2 793 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 PCDHB2Q9Y5E7 798 aa15.75■□□□□ 0.11
VRK3-213ENST00000597215 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.74■□□□□ 0.11
VRK3-213ENST00000597215 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.74■□□□□ 0.11
VRK3-213ENST00000597215 TOM1L1O75674 476 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 UPP2O95045 317 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 GJB5O95377 273 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 NPTXRO95502 500 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 EOMESO95936 686 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 ZNF568Q3ZCX4 644 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 EEF1DP3Q658K8 133 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 FAM117BQ6P1L5 589 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 MPZL3Q6UWV2 235 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 EPM2AIP1Q7L775 607 aaPredicted RBP15.74■□□□□ 0.11
VRK3-213ENST00000597215 CDR2LQ86X02 465 aaPredicted RBP15.74■□□□□ 0.11
VRK3-213ENST00000597215 HACE1Q8IYU2 909 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 SPATA20Q8TB22 786 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 PGBD4Q96DM1 585 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 ZBED2Q9BTP6 218 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 EIF2AQ9BY44 585 aaKnown RBP15.74■□□□□ 0.11
VRK3-213ENST00000597215 CLSTN2Q9H4D0 955 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 TMEM206Q9H813 350 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 PCDHA5Q9Y5H7 936 aa15.74■□□□□ 0.11
VRK3-213ENST00000597215 HOXA2O43364 376 aa15.73■□□□□ 0.11
VRK3-213ENST00000597215 PRPF6O94906 941 aaKnown RBP15.73■□□□□ 0.11
VRK3-213ENST00000597215 PTMSP20962 102 aa15.73■□□□□ 0.11
VRK3-213ENST00000597215 PROZP22891 400 aa15.73■□□□□ 0.11
VRK3-213ENST00000597215 MATR3P43243 847 aaKnown RBP eCLIP15.73■□□□□ 0.11
VRK3-213ENST00000597215 NOLC1Q14978 699 aaKnown RBP eCLIP15.73■□□□□ 0.11
VRK3-213ENST00000597215 LRIT3Q3SXY7 679 aa15.73■□□□□ 0.11
VRK3-213ENST00000597215 FAM109BQ6ICB4 259 aaPredicted RBP15.73■□□□□ 0.11
VRK3-213ENST00000597215 TMCO2Q7Z6W1 182 aaPredicted RBP15.73■□□□□ 0.11
VRK3-213ENST00000597215 ZNF598Q86UK7 904 aaKnown RBP15.73■□□□□ 0.11
VRK3-213ENST00000597215 SYCP3Q8IZU3 236 aa15.73■□□□□ 0.11
VRK3-213ENST00000597215 CRIPAKQ8N1N5 446 aa15.73■□□□□ 0.11
VRK3-213ENST00000597215 RNF169Q8NCN4 708 aa15.73■□□□□ 0.11
VRK3-213ENST00000597215 KIAA0895Q8NCT3 520 aa15.73■□□□□ 0.11
VRK3-213ENST00000597215 GLIS3Q8NEA6 775 aa15.73■□□□□ 0.11
VRK3-213ENST00000597215 GPT2Q8TD30 523 aa15.73■□□□□ 0.11
VRK3-213ENST00000597215 TCHPQ9BT92 498 aa15.73■□□□□ 0.11
VRK3-213ENST00000597215 GTPBP4Q9BZE4 634 aaKnown RBP15.73■□□□□ 0.11
VRK3-213ENST00000597215 CDT1Q9H211 546 aa15.73■□□□□ 0.11
VRK3-213ENST00000597215 PTPRHQ9HD43 1115 aa15.73■□□□□ 0.11
VRK3-213ENST00000597215 ANKFY1Q9P2R3 1169 aa15.73■□□□□ 0.11
VRK3-213ENST00000597215 IPPQ9Y573 584 aa15.73■□□□□ 0.11
VRK3-213ENST00000597215 LAMA2P24043 3122 aaKnown RBP15.72■□□□□ 0.11
VRK3-213ENST00000597215 GBF1Q92538 1859 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 GRXCR1A8MXD5 290 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 CLDN3O15551 220 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 TLL1O43897 1013 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 MCF2P10911 925 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 ATF7P17544 494 aaPredicted RBP15.72■□□□□ 0.11
VRK3-213ENST00000597215 SMAD3P84022 425 aaKnown RBP15.72■□□□□ 0.11
VRK3-213ENST00000597215 KCNA1Q09470 495 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 STK4Q13043 487 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 CAMK4Q16566 473 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 BMT2Q1RMZ1 405 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 MRPL10Q7Z7H8 261 aaKnown RBP15.72■□□□□ 0.11
VRK3-213ENST00000597215 SMG8Q8ND04 991 aaKnown RBP15.72■□□□□ 0.11
VRK3-213ENST00000597215 ZNF507Q8TCN5 953 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 SCFD1Q8WVM8 642 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 ERCC4Q92889 916 aaPredicted RBP15.72■□□□□ 0.11
VRK3-213ENST00000597215 YME1L1Q96TA2 773 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 RAD9AQ99638 391 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 NUP62CLQ9H1M0 184 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 NXF3Q9H4D5 531 aaKnown RBP15.72■□□□□ 0.11
VRK3-213ENST00000597215 INSL6Q9Y581 213 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 PCDHA11Q9Y5I1 949 aa15.72■□□□□ 0.11
VRK3-213ENST00000597215 TRIOBPQ9H2D6 2365 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms