RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 FAM187BQ17R55 369 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 EPC2Q52LR7 807 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 CLLU1OSQ5K130 101 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 NT5DC1Q5TFE4 455 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 RESP18Q5W5W9 173 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 SLC27A1Q6PCB7 646 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 PPP4R3CPQ6ZMV5 832 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 ZNF598Q86UK7 904 aaKnown RBP12.2□□□□□ -0.46
LIG1-211ENST00000596457 IQUBQ8NA54 791 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 PRIMPOLQ96LW4 560 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 CASD1Q96PB1 797 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 ADPGKQ9BRR6 497 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 TMEM117Q9H0C3 514 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 CCDC113Q9H0I3 377 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 C17orf75Q9HAS0 396 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 RC3H2Q9HBD1 1191 aaKnown RBP12.2□□□□□ -0.46
LIG1-211ENST00000596457 RNF19AQ9NV58 838 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 TYW1Q9NV66 732 aaKnown RBP12.2□□□□□ -0.46
LIG1-211ENST00000596457 TBC1D7Q9P0N9 293 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 PARP2Q9UGN5 583 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 KCNG1Q9UIX4 513 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 RBM19Q9Y4C8 960 aaKnown RBP12.2□□□□□ -0.46
LIG1-211ENST00000596457 HES2Q9Y543 173 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 IPPQ9Y573 584 aa12.2□□□□□ -0.46
LIG1-211ENST00000596457 PHLPP2Q6ZVD8 1323 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 CNTNAP2Q9UHC6 1331 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 BDP1A6H8Y1 2624 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 K7ENM7 598 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 TRAK2O60296 914 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 HARSP12081 509 aaKnown RBP12.19□□□□□ -0.46
LIG1-211ENST00000596457 AKAP5P24588 427 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 NMT1P30419 496 aaKnown RBP12.19□□□□□ -0.46
LIG1-211ENST00000596457 AFMP43652 599 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 GPM6BQ13491 265 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 CCDC85BQ15834 202 aaPredicted RBP12.19□□□□□ -0.46
LIG1-211ENST00000596457 ATF7IP2Q5U623 682 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 EEF1DP3Q658K8 133 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 ADALQ6DHV7 355 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 HAUS6Q7Z4H7 955 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 ZBTB33Q86T24 672 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 ALYREFQ86V81 257 aaKnown RBP12.19□□□□□ -0.46
LIG1-211ENST00000596457 SFR1Q86XK3 245 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 FAM178BQ8IXR5 827 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 SMG8Q8ND04 991 aaKnown RBP12.19□□□□□ -0.46
LIG1-211ENST00000596457 SPIRE2Q8WWL2 714 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 ATXN2LQ8WWM7 1075 aaKnown RBP12.19□□□□□ -0.46
LIG1-211ENST00000596457 BICD1Q96G01 975 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 TCHPQ9BT92 498 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 GBP3Q9H0R5 595 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 RNF39Q9H2S5 420 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 PDZD7Q9H5P4 517 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 TMEM134Q9H6X4 195 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 RSAD1Q9HA92 442 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 PARVGQ9HBI0 331 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 LMCD1Q9NZU5 365 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 SERTAD1Q9UHV2 236 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 KCNH3Q9ULD8 1083 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 COL4A6Q14031 1691 aa12.19□□□□□ -0.46
LIG1-211ENST00000596457 TDRD15B5MCY1 1934 aaKnown RBP12.18□□□□□ -0.46
LIG1-211ENST00000596457 A0A1B0GUA9 196 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 GOLGA6L4A6NEF3 574 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 ZNF623O75123 536 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 OFD1O75665 1012 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 PFKFB1P16118 471 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 BMPR1AP36894 532 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 NCKAP1LP55160 1127 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 RNASELQ05823 741 aaKnown RBP12.18□□□□□ -0.46
LIG1-211ENST00000596457 ADGRE1Q14246 886 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 E2F4Q16254 413 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 GLB1LQ6UWU2 654 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 AGMOQ6ZNB7 445 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 LRRC55Q6ZSA7 311 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 TAS1R3Q7RTX0 852 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 MRPL10Q7Z7H8 261 aaKnown RBP12.18□□□□□ -0.46
LIG1-211ENST00000596457 HACE1Q8IYU2 909 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 CEP57L1Q8IYX8 460 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 FSIP1Q8NA03 581 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 TMEM161BQ8NDZ6 487 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 CNNM3Q8NE01 707 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 URGCPQ8TCY9 931 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 CCDC51Q96ER9 411 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 SAMD11Q96NU1 681 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 NTPCRQ9BSD7 190 aaKnown RBP12.18□□□□□ -0.46
LIG1-211ENST00000596457 TARS2Q9BW92 718 aaKnown RBP12.18□□□□□ -0.46
LIG1-211ENST00000596457 TRAIPQ9BWF2 469 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 MRPL4Q9BYD3 311 aaKnown RBP12.18□□□□□ -0.46
LIG1-211ENST00000596457 LRRC27Q9C0I9 530 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 NXF3Q9H4D5 531 aaKnown RBP12.18□□□□□ -0.46
LIG1-211ENST00000596457 PANK4Q9NVE7 773 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 SNTG2Q9NY99 539 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 KLK14Q9P0G3 267 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 ARHGAP28Q9P2N2 729 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 GDAQ9Y2T3 454 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 HCN4Q9Y3Q4 1203 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 RWDD3Q9Y3V2 267 aa12.18□□□□□ -0.46
LIG1-211ENST00000596457 PLXNA4Q9HCM2 1894 aa12.17□□□□□ -0.46
LIG1-211ENST00000596457 H0YCG3 227 aa12.17□□□□□ -0.46
LIG1-211ENST00000596457 POMCP01189 267 aa12.17□□□□□ -0.46
LIG1-211ENST00000596457 MAPTP10636 758 aaKnown RBP12.17□□□□□ -0.46
LIG1-211ENST00000596457 CMA1P23946 247 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms