RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 CDK5RAP3Q96JB5 506 aa16.69■□□□□ 0.26
TRIM28-205ENST00000595028 IFT74Q96LB3 600 aa16.69■□□□□ 0.26
TRIM28-205ENST00000595028 KIFC3Q9BVG8 833 aa16.69■□□□□ 0.26
TRIM28-205ENST00000595028 TRIM6Q9C030 488 aaPredicted RBP16.69■□□□□ 0.26
TRIM28-205ENST00000595028 CCDC113Q9H0I3 377 aa16.69■□□□□ 0.26
TRIM28-205ENST00000595028 FZD8Q9H461 694 aa16.69■□□□□ 0.26
TRIM28-205ENST00000595028 CLDND1Q9NY35 253 aa16.69■□□□□ 0.26
TRIM28-205ENST00000595028 SPG21Q9NZD8 308 aa16.69■□□□□ 0.26
TRIM28-205ENST00000595028 MTMR6Q9Y217 621 aa16.69■□□□□ 0.26
TRIM28-205ENST00000595028 A0A1B0GUA9 196 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 CARNS1A5YM72 827 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 FSCN2O14926 492 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 INPPL1O15357 1258 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 SLC26A4O43511 780 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 B4GALT3O60512 393 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 PRKCBP05771 671 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 ITGA4P13612 1032 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 BCAR1P56945 870 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 RNASELQ05823 741 aaKnown RBP16.68■□□□□ 0.26
TRIM28-205ENST00000595028 CTC1Q2NKJ3 1217 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 PUS10Q3MIT2 529 aaKnown RBP16.68■□□□□ 0.26
TRIM28-205ENST00000595028 RINT1Q6NUQ1 792 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 SLC27A1Q6PCB7 646 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 CABP7Q86V35 215 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 CDR2LQ86X02 465 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-205ENST00000595028 HSCBQ8IWL3 235 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 NXF3Q9H4D5 531 aaKnown RBP16.68■□□□□ 0.26
TRIM28-205ENST00000595028 POLD4Q9HCU8 107 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 UBN1Q9NPG3 1134 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 SPTBN4Q9H254 2564 aa16.68■□□□□ 0.26
TRIM28-205ENST00000595028 ZMYM2Q9UBW7 1377 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 H3BQ06 376 aaPredicted RBP16.67■□□□□ 0.26
TRIM28-205ENST00000595028 HIP1RO75146 1068 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 NPTXRO95502 500 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 EDN1P05305 212 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 GTF2F1P35269 517 aaKnown RBP eCLIP16.67■□□□□ 0.26
TRIM28-205ENST00000595028 LTBRP36941 435 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 MLH1P40692 756 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 ALDH7A1P49419 539 aaKnown RBP16.67■□□□□ 0.26
TRIM28-205ENST00000595028 AFF1P51825 1210 aaKnown RBP16.67■□□□□ 0.26
TRIM28-205ENST00000595028 ERVFC1P60507 584 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 MAPK7Q13164 816 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 MAPK6Q16659 721 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 PDE12Q6L8Q7 609 aaKnown RBP16.67■□□□□ 0.26
TRIM28-205ENST00000595028 EP400NLQ6ZTU2 488 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 C1orf186Q6ZWK4 172 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 TMEM173Q86WV6 379 aaPredicted RBP16.67■□□□□ 0.26
TRIM28-205ENST00000595028 HACE1Q8IYU2 909 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 DAW1Q8N136 415 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 TMEM169Q96HH4 297 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 DRC1Q96MC2 740 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 MFSD14AQ96MC6 490 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 TCF25Q9BQ70 676 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 RNF39Q9H2S5 420 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 PDZD7Q9H5P4 517 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 NRDE2Q9H7Z3 1164 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 ENTPD7Q9NQZ7 604 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 PUF60Q9UHX1 559 aaKnown RBP16.67■□□□□ 0.26
TRIM28-205ENST00000595028 HES2Q9Y543 173 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 PHLPP2Q6ZVD8 1323 aa16.67■□□□□ 0.26
TRIM28-205ENST00000595028 ZFHX2Q9C0A1 2572 aaPredicted RBP16.66■□□□□ 0.26
TRIM28-205ENST00000595028 TTLL13PA6NNM8 815 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 NT5C1B-RDH14C9J2C7 533 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 ACKR2O00590 384 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 N4BP3O15049 544 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 STX6O43752 255 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 TBX10O75333 385 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 GUCY2CP25092 1073 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 LONP1P36776 959 aaKnown RBP16.66■□□□□ 0.26
TRIM28-205ENST00000595028 UBA7P41226 1012 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 NRIP1P48552 1158 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 EFNA5P52803 228 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 KRT17Q04695 432 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 GRIN1Q05586 938 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 ZP2Q05996 745 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 DMP1Q13316 513 aaPredicted RBP16.66■□□□□ 0.26
TRIM28-205ENST00000595028 PRPF4BQ13523 1007 aaKnown RBP16.66■□□□□ 0.26
TRIM28-205ENST00000595028 PTPAQ15257 358 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 PLPP4Q5VZY2 271 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 FAM173BQ6P4H8 233 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 EFHBQ8N7U6 833 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 MICAL1Q8TDZ2 1067 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 GAD1Q99259 594 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 PLIN2Q99541 437 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 TIPINQ9BVW5 301 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 APOL6Q9BWW8 343 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 GBP3Q9H0R5 595 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 IGFLR1Q9H665 355 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 KANSL3Q9P2N6 904 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 DNAJB4Q9UDY4 337 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 CLIC4Q9Y696 253 aa16.66■□□□□ 0.26
TRIM28-205ENST00000595028 ARL5CA6NH57 179 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 LINC01565O15544 149 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 POMCP01189 267 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 SSBP05455 408 aaKnown RBP eCLIP16.65■□□□□ 0.26
TRIM28-205ENST00000595028 GALTP07902 379 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 PLA2G4BP0C869 781 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 LIG1P18858 919 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 NPTX2P47972 431 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 SLC11A1P49279 550 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms