RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 TCP11Q8WWU5 503 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 SNX21Q969T3 373 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 INTS4Q96HW7 963 aaKnown RBP12.47□□□□□ -0.41
SMAD4-211ENST00000590499 NLRP4Q96MN2 994 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 NACC1Q96RE7 527 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 MINDY3Q9H8M7 445 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 ATP6V0A4Q9HBG4 840 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 RNF19AQ9NV58 838 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 TMEM161AQ9NX61 479 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 LMCD1Q9NZU5 365 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 MRPL42Q9Y6G3 142 aaKnown RBP12.47□□□□□ -0.41
SMAD4-211ENST00000590499 H3BNC9 293 aa12.46□□□□□ -0.41
SMAD4-211ENST00000590499 K7ELQ4 463 aaPredicted RBP12.46□□□□□ -0.41
SMAD4-211ENST00000590499 ASAP2O43150 1006 aa12.46□□□□□ -0.41
SMAD4-211ENST00000590499 ATF7P17544 494 aaPredicted RBP12.46□□□□□ -0.41
SMAD4-211ENST00000590499 SFPQP23246 707 aaKnown RBP eCLIP12.46□□□□□ -0.41
SMAD4-211ENST00000590499 ARL2P36404 184 aa12.46□□□□□ -0.41
SMAD4-211ENST00000590499 CSPP1Q1MSJ5 1256 aa12.46□□□□□ -0.41
SMAD4-211ENST00000590499 SRGAP1Q7Z6B7 1085 aa12.46□□□□□ -0.41
SMAD4-211ENST00000590499 ECHDC2Q86YB7 292 aa12.46□□□□□ -0.41
SMAD4-211ENST00000590499 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.46□□□□□ -0.41
SMAD4-211ENST00000590499 SLC17A8Q8NDX2 589 aa12.46□□□□□ -0.41
SMAD4-211ENST00000590499 ASAP3Q8TDY4 903 aa12.46□□□□□ -0.41
SMAD4-211ENST00000590499 MMTAG2Q9BU76 263 aaKnown RBP12.46□□□□□ -0.41
SMAD4-211ENST00000590499 TRAIPQ9BWF2 469 aa12.46□□□□□ -0.41
SMAD4-211ENST00000590499 INO80BQ9C086 356 aaPredicted RBP12.46□□□□□ -0.41
SMAD4-211ENST00000590499 CHST12Q9NRB3 414 aa12.46□□□□□ -0.41
SMAD4-211ENST00000590499 LRWD1Q9UFC0 647 aa12.46□□□□□ -0.41
SMAD4-211ENST00000590499 LRFN2Q9ULH4 789 aa12.46□□□□□ -0.41
SMAD4-211ENST00000590499 RWDD3Q9Y3V2 267 aa12.46□□□□□ -0.41
SMAD4-211ENST00000590499 PCDHB7Q9Y5E2 793 aa12.46□□□□□ -0.41
SMAD4-211ENST00000590499 PLXNA4Q9HCM2 1894 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 A0A0U1RQF3 1178 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 PP2D1A8MPX8 630 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 CFAP99D6REC4 459 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 USO1O60763 962 aaKnown RBP12.45□□□□□ -0.42
SMAD4-211ENST00000590499 RB1P06400 928 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 ZSCAN20P17040 1043 aaPredicted RBP12.45□□□□□ -0.42
SMAD4-211ENST00000590499 PDCP20941 246 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 GLRA2P23416 452 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 CTNNB1P35222 781 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 BMPR1AP36894 532 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 CCT6AP40227 531 aaKnown RBP12.45□□□□□ -0.42
SMAD4-211ENST00000590499 PTENP60484 403 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 POU5F1BQ06416 359 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 CAPSQ13938 189 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 MXD4Q14582 209 aaPredicted RBP12.45□□□□□ -0.42
SMAD4-211ENST00000590499 CCDC85BQ15834 202 aaPredicted RBP12.45□□□□□ -0.42
SMAD4-211ENST00000590499 PAN2Q504Q3 1202 aaKnown RBP12.45□□□□□ -0.42
SMAD4-211ENST00000590499 FAM102BQ5T8I3 360 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 BRAPQ7Z569 592 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 RNF149Q8NC42 400 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 RAB34Q9BZG1 259 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 PRDM6Q9NQX0 595 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 AGPAT5Q9NUQ2 364 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 DACT1Q9NYF0 836 aa12.45□□□□□ -0.42
SMAD4-211ENST00000590499 SRGAP2CP0DJJ0 459 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 FGFR1P11362 822 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 SYT1P21579 422 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 HOXA11P31270 313 aaPredicted RBP12.44□□□□□ -0.42
SMAD4-211ENST00000590499 KCNH2Q12809 1159 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 GPM6BQ13491 265 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 SUZ12Q15022 739 aaKnown RBP12.44□□□□□ -0.42
SMAD4-211ENST00000590499 CLLU1OSQ5K130 101 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 ARL6IP4Q66PJ3 421 aaKnown RBP12.44□□□□□ -0.42
SMAD4-211ENST00000590499 DTHD1Q6ZMT9 781 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 CATSPER4Q7RTX7 472 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 MICALL1Q8N3F8 863 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 MCPH1Q8NEM0 835 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 SNX29Q8TEQ0 813 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 PPM1EQ8WY54 764 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 CCDC43Q96MW1 224 aaKnown RBP12.44□□□□□ -0.42
SMAD4-211ENST00000590499 C11orf84Q9BUA3 381 aaPredicted RBP12.44□□□□□ -0.42
SMAD4-211ENST00000590499 PLVAPQ9BX97 442 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 NFKBIZQ9BYH8 718 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 POLR3FQ9H1D9 316 aaPredicted RBP12.44□□□□□ -0.42
SMAD4-211ENST00000590499 GPRC5CQ9NQ84 441 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 LIMD1Q9UGP4 676 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 PIN4Q9Y237 131 aaKnown RBP12.44□□□□□ -0.42
SMAD4-211ENST00000590499 MYH15Q9Y2K3 1946 aa12.44□□□□□ -0.42
SMAD4-211ENST00000590499 VPS37CA5D8V6 355 aaPredicted RBP12.43□□□□□ -0.42
SMAD4-211ENST00000590499 TBKBP1A7MCY6 615 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 SIAH2O43255 324 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 ZNF623O75123 536 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 EOMESO95936 686 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 CYP11B2P19099 503 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 IBSPP21815 317 aaPredicted RBP12.43□□□□□ -0.42
SMAD4-211ENST00000590499 CDC25AP30304 524 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 PHKA2P46019 1235 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 MBTD1Q05BQ5 628 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 RESTQ13127 1097 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 PCBP1Q15365 356 aaKnown RBP eCLIP12.43□□□□□ -0.42
SMAD4-211ENST00000590499 HYIQ5T013 277 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 P2RX5Q93086 422 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 MRPL38Q96DV4 380 aaKnown RBP12.43□□□□□ -0.42
SMAD4-211ENST00000590499 CASD1Q96PB1 797 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 TMEM117Q9H0C3 514 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 CWH43Q9H720 699 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 FAM105AQ9NUU6 356 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 DDX19AQ9NUU7 478 aaKnown RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms