RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 PTPRHQ9HD43 1115 aa11.75□□□□□ -0.53
SMARCA4-213ENST00000587988 CHST12Q9NRB3 414 aa11.75□□□□□ -0.53
SMARCA4-213ENST00000587988 RGS18Q9NS28 235 aa11.75□□□□□ -0.53
SMARCA4-213ENST00000587988 MAPK8IP1Q9UQF2 711 aa11.75□□□□□ -0.53
SMARCA4-213ENST00000587988 ZMYM2Q9UBW7 1377 aa11.75□□□□□ -0.53
SMARCA4-213ENST00000587988 PTPRSQ13332 1948 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 PDE4DIPQ5VU43 2346 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 ZBBXA8MT70 800 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 C9IYK1 514 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 NPTXRO95502 500 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 PIGRP01833 764 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 ACTN1P12814 892 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 IBSPP21815 317 aaPredicted RBP11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 SCP2P22307 547 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 PROZP22891 400 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 PRCPP42785 496 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 WDR5P61964 334 aaKnown RBP11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 BMT2Q1RMZ1 405 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 CCDC183Q5T5S1 534 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 ZNF658Q5TYW1 1059 aaPredicted RBP11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 NOTUMQ6P988 496 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 RBM43Q6ZSC3 357 aaKnown RBP11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 TMCO2Q7Z6W1 182 aaPredicted RBP11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 ZBTB33Q86T24 672 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 BICD1Q96G01 975 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 FAM105AQ9NUU6 356 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 RMND1Q9NWS8 449 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 TNFSF13BQ9Y275 285 aa11.74□□□□□ -0.53
SMARCA4-213ENST00000587988 A0A0U1RQF3 1178 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 MEIS3P2A8K0S8 358 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 HNRNPDLO14979 420 aaKnown RBP11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 N4BP3O15049 544 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 TGFB1I1O43294 461 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 BAIAP3O94812 1187 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 UBE4BO95155 1302 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 CD44P16070 742 aaKnown RBP11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 ATF7P17544 494 aaPredicted RBP11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 ADSSP30520 456 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 ABCD1P33897 745 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 BMP8BP34820 402 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 LIG4P49917 911 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 TTC3P53804 2025 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 FAM189BP81408 668 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 NCBP1Q09161 790 aaKnown RBP11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 RASIP1Q5U651 963 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 SLC27A1Q6PCB7 646 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 MPZL3Q6UWV2 235 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 CHRDL2Q6WN34 429 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 ZPBP2Q6X784 338 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 STXBP4Q6ZWJ1 553 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 SLC24A5Q71RS6 500 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 ECHDC2Q86YB7 292 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 MYOCDQ8IZQ8 938 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 SYCP3Q8IZU3 236 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 CRIPAKQ8N1N5 446 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 SMG8Q8ND04 991 aaKnown RBP11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 CDT1Q9H211 546 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 RNF39Q9H2S5 420 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 PRO3102Q9H379 93 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 TMEM206Q9H813 350 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 ANKFY1Q9P2R3 1169 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 EXOC7Q9UPT5 735 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 HES2Q9Y543 173 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 PCDHB2Q9Y5E7 798 aa11.73□□□□□ -0.53
SMARCA4-213ENST00000587988 TOM1L1O75674 476 aa11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 UPP2O95045 317 aa11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 HARSP12081 509 aaKnown RBP11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 MCL1Q07820 350 aa11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 KNOP1Q1ED39 458 aaKnown RBP11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 ZNF568Q3ZCX4 644 aa11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 SEZ6Q53EL9 994 aa11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 ZNF598Q86UK7 904 aaKnown RBP11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 GUF1Q8N442 669 aaKnown RBP11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 CEP120Q8N960 986 aa11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 ZSWIM2Q8NEG5 633 aa11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 LPPQ93052 612 aa11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 CCDC51Q96ER9 411 aa11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 TCHPQ9BT92 498 aa11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 TRAIPQ9BWF2 469 aa11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 KCTD10Q9H3F6 313 aa11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 NXF3Q9H4D5 531 aaKnown RBP11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 C1orf112Q9NSG2 853 aa11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 IPPQ9Y573 584 aa11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 STYXL1Q9Y6J8 313 aa11.72□□□□□ -0.53
SMARCA4-213ENST00000587988 PPP1R3GB7ZBB8 358 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 CLIC2O15247 247 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 CLDN3O15551 220 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 EFCAB14O75071 495 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 ZNF623O75123 536 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 AMHP03971 560 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 MATR3P43243 847 aaKnown RBP eCLIP11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 KCNJ6P48051 423 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 OSTNP61366 133 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 NOLC1Q14978 699 aaKnown RBP eCLIP11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 SKOR2Q2VWA4 1001 aaPredicted RBP11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 COBLL1Q53SF7 1204 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 ZBTB41Q5SVQ8 909 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 FAM117BQ6P1L5 589 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 AGMOQ6ZNB7 445 aa11.71□□□□□ -0.53
SMARCA4-213ENST00000587988 FAM43BQ6ZT52 329 aaPredicted RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms