RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 ZFP42Q96MM3 310 aa12.98□□□□□ -0.33
LIG3-207ENST00000586119 APOL6Q9BWW8 343 aa12.98□□□□□ -0.33
LIG3-207ENST00000586119 CACNG4Q9UBN1 327 aa12.98□□□□□ -0.33
LIG3-207ENST00000586119 TPCN1Q9ULQ1 816 aa12.98□□□□□ -0.33
LIG3-207ENST00000586119 USTQ9Y2C2 406 aa12.98□□□□□ -0.33
LIG3-207ENST00000586119 IPPQ9Y573 584 aa12.98□□□□□ -0.33
LIG3-207ENST00000586119 RIF1Q5UIP0 2472 aaKnown RBP12.97□□□□□ -0.33
LIG3-207ENST00000586119 SPDYE4A6NLX3 237 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 TEX28O15482 410 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 TSPAN1O60635 241 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 RFPL2O75678 378 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 SLITRK3O94933 977 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 EFEMP2O95967 443 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 ITGA4P13612 1032 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 AK2P54819 239 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 NR5A1Q13285 461 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 KIAA0319Q5VV43 1072 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 PPP4R3AQ6IN85 833 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 PPFIBP1Q86W92 1011 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 TPH2Q8IWU9 490 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 JPH2Q9BR39 696 aaPredicted RBP12.97□□□□□ -0.33
LIG3-207ENST00000586119 TMEM175Q9BSA9 504 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 EMILIN2Q9BXX0 1053 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 TM6SF1Q9BZW5 370 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 MFSD1Q9H3U5 465 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 SFXN1Q9H9B4 322 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 KCNK12Q9HB15 430 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 MAN1C1Q9NR34 630 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 MRPL17Q9NRX2 175 aaKnown RBP12.97□□□□□ -0.33
LIG3-207ENST00000586119 DMDP11532 3685 aa12.97□□□□□ -0.33
LIG3-207ENST00000586119 CCDC195A0A1B0GUA6 201 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 ARL5CA6NH57 179 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 B4GALT5O43286 388 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 MARCH6O60337 910 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 SOD2P04179 222 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 FDPSP14324 419 aaKnown RBP12.96□□□□□ -0.33
LIG3-207ENST00000586119 AKAP5P24588 427 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 MLH1P40692 756 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 RFC5P40937 340 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 SCNN1GP51170 649 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 PTENP60484 403 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 AMHR2Q16671 573 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 FRMD5Q7Z6J6 570 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 PALB2Q86YC2 1186 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 GLYCTKQ8IVS8 523 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 RNF168Q8IYW5 571 aaPredicted RBP12.96□□□□□ -0.33
LIG3-207ENST00000586119 NECAB1Q8N987 351 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 GSTCDQ8NEC7 633 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 RPS6KC1Q96S38 1066 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 MTRQ99707 1265 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 HERC2P3Q9BVR0 1158 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 GPR62Q9BZJ7 368 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 CXCL16Q9H2A7 254 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 KLK14Q9P0G3 267 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 KANSL3Q9P2N6 904 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 FAM186AA6NE01 2351 aa12.96□□□□□ -0.33
LIG3-207ENST00000586119 CNTNAP2Q9UHC6 1331 aa12.95□□□□□ -0.34
LIG3-207ENST00000586119 PROB1E7EW31 1015 aa12.95□□□□□ -0.34
LIG3-207ENST00000586119 INO80B-WBP1J3KQ70 363 aa12.95□□□□□ -0.34
LIG3-207ENST00000586119 ASAP2O43150 1006 aa12.95□□□□□ -0.34
LIG3-207ENST00000586119 ARF4P18085 180 aaPredicted RBP12.95□□□□□ -0.34
LIG3-207ENST00000586119 RPL17P18621 184 aaKnown RBP12.95□□□□□ -0.34
LIG3-207ENST00000586119 FOSBP53539 338 aa12.95□□□□□ -0.34
LIG3-207ENST00000586119 DSC1Q08554 894 aa12.95□□□□□ -0.34
LIG3-207ENST00000586119 TDGQ13569 410 aa12.95□□□□□ -0.34
LIG3-207ENST00000586119 CPLX2Q6PUV4 134 aaKnown RBP12.95□□□□□ -0.34
LIG3-207ENST00000586119 CCDC149Q6ZUS6 474 aa12.95□□□□□ -0.34
LIG3-207ENST00000586119 OTOP3Q7RTS5 596 aa12.95□□□□□ -0.34
LIG3-207ENST00000586119 TNFRSF25Q93038 417 aa12.95□□□□□ -0.34
LIG3-207ENST00000586119 ACSF2Q96CM8 615 aaPredicted RBP12.95□□□□□ -0.34
LIG3-207ENST00000586119 MYADMQ96S97 322 aa12.95□□□□□ -0.34
LIG3-207ENST00000586119 EIF2AK1Q9BQI3 630 aaKnown RBP12.95□□□□□ -0.34
LIG3-207ENST00000586119 NXF3Q9H4D5 531 aaKnown RBP12.95□□□□□ -0.34
LIG3-207ENST00000586119 ZSWIM4Q9H7M6 989 aa12.95□□□□□ -0.34
LIG3-207ENST00000586119 PRR23AA6NEV1 266 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 TBX3O15119 743 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 INPPL1O15357 1258 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 PFKFB2O60825 505 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 DKC1O60832 514 aaKnown RBP eCLIP12.94□□□□□ -0.34
LIG3-207ENST00000586119 ERLIN2O94905 339 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 LARGE1O95461 756 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 CFHP08603 1231 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 GLRA2P23416 452 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 GBP2P32456 591 aaPredicted RBP12.94□□□□□ -0.34
LIG3-207ENST00000586119 ARL2P36404 184 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 NBL1P41271 181 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 CLCN5P51795 746 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 NUBP1P53384 320 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 MBTD1Q05BQ5 628 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 CAPSQ13938 189 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 MAEAQ7L5Y9 396 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 OTUD6AQ7L8S5 288 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 SIX5Q8N196 739 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 PIGOQ8TEQ8 1089 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 TCP11Q8WWU5 503 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 RSPH1Q8WYR4 309 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 ZNF707Q96C28 371 aaPredicted RBP12.94□□□□□ -0.34
LIG3-207ENST00000586119 SNX27Q96L92 541 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 HSD17B14Q9BPX1 270 aa12.94□□□□□ -0.34
LIG3-207ENST00000586119 PAAF1Q9BRP4 392 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms