RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 ICAM4Q14773 271 aa6.1□□□□□ -1.43
SMCHD1-204ENST00000581226 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.1□□□□□ -1.43
SMCHD1-204ENST00000581226 CHST13Q8NET6 341 aa6.1□□□□□ -1.43
SMCHD1-204ENST00000581226 GPR156Q8NFN8 814 aa6.1□□□□□ -1.43
SMCHD1-204ENST00000581226 OR5M3Q8NGP4 307 aa6.1□□□□□ -1.43
SMCHD1-204ENST00000581226 ARL8AQ96BM9 186 aa6.1□□□□□ -1.43
SMCHD1-204ENST00000581226 SAMD11Q96NU1 681 aa6.1□□□□□ -1.43
SMCHD1-204ENST00000581226 ADI1Q9BV57 179 aa6.1□□□□□ -1.43
SMCHD1-204ENST00000581226 ST6GALNAC2Q9UJ37 374 aa6.1□□□□□ -1.43
SMCHD1-204ENST00000581226 B8ZZF3 427 aa6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 ZNF623O75123 536 aa6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 PHF2O75151 1096 aa6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 GSPT1P15170 499 aaKnown RBP6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 MSX2P35548 267 aaPredicted RBP6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 CASRP41180 1078 aa6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 KRT85P78386 507 aa6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 FOXL1Q12952 345 aa6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 FAM111BQ6SJ93 734 aa6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 DNERQ8NFT8 737 aa6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 Q8TCH9 128 aa6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 SLC13A1Q9BZW2 595 aa6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 DEF6Q9H4E7 631 aa6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 DMRT3Q9NQL9 472 aa6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 RBM12Q9NTZ6 932 aaKnown RBP6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 SCOCQ9UIL1 159 aa6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 DNM3Q9UQ16 869 aa6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 SLC30A1Q9Y6M5 507 aa6.09□□□□□ -1.43
SMCHD1-204ENST00000581226 NDUFS2O75306 463 aa6.08□□□□□ -1.44
SMCHD1-204ENST00000581226 GYPEP15421 78 aa6.08□□□□□ -1.44
SMCHD1-204ENST00000581226 MCAMP43121 646 aa6.08□□□□□ -1.44
SMCHD1-204ENST00000581226 NEK2P51955 445 aa6.08□□□□□ -1.44
SMCHD1-204ENST00000581226 NOMO1Q15155 1222 aa6.08□□□□□ -1.44
SMCHD1-204ENST00000581226 HS1BP3Q53T59 392 aa6.08□□□□□ -1.44
SMCHD1-204ENST00000581226 EFCAB2Q5VUJ9 269 aa6.08□□□□□ -1.44
SMCHD1-204ENST00000581226 POLNQ7Z5Q5 900 aa6.08□□□□□ -1.44
SMCHD1-204ENST00000581226 ZBTB46Q86UZ6 589 aa6.08□□□□□ -1.44
SMCHD1-204ENST00000581226 CHMP4CQ96CF2 233 aa6.08□□□□□ -1.44
SMCHD1-204ENST00000581226 SMPD4Q9NXE4 827 aa6.08□□□□□ -1.44
SMCHD1-204ENST00000581226 GPRC5DQ9NZD1 345 aa6.08□□□□□ -1.44
SMCHD1-204ENST00000581226 ITGA10O75578 1167 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 ALDH1L1O75891 902 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 SNUPNO95149 360 aaKnown RBP6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 C5AR1P21730 350 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 COMTP21964 271 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 HHEXQ03014 270 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 PPP3CAQ08209 521 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 ODF1Q14990 250 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 FKBP15Q5T1M5 1219 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 ZNF585AQ6P3V2 769 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 D2HGDHQ8N465 521 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 TTC9BQ8N6N2 239 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 ZNF480Q8WV37 535 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 TEKT5Q96M29 485 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 CDC5LQ99459 802 aaKnown RBP6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 EPC1Q9H2F5 836 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 CD248Q9HCU0 757 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 AASDHPPTQ9NRN7 309 aa6.07□□□□□ -1.44
SMCHD1-204ENST00000581226 GASTP01350 101 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 ECHS1P30084 290 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 BUD31P41223 144 aaPredicted RBP6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 RECQLP46063 649 aaPredicted RBP6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 PER3P56645 1201 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 MST1LQ2TV78 715 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 GJC2Q5T442 439 aaPredicted RBP6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 Q6ZVL8 140 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 SGMS1Q86VZ5 419 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 NRG4Q8WWG1 115 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 IL17RAQ96F46 866 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 ZNF512Q96ME7 567 aaPredicted RBP6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 C8orf49Q96NF6 230 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 WWC2-AS2Q96NR7 200 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 MPHOSPH9Q99550 1183 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 ENKD1Q9H0I2 346 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 SAP30BPQ9UHR5 308 aaKnown RBP6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 TUBD1Q9UJT1 453 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 INTUQ9ULD6 942 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 SH3BP1Q9Y3L3 701 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 TCAF1Q9Y4C2 921 aa6.06□□□□□ -1.44
SMCHD1-204ENST00000581226 PPM1GO15355 546 aaPredicted RBP6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 HOXA3O43365 443 aaPredicted RBP6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 STC2O76061 302 aa6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 ACO1P21399 889 aaKnown RBP6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 CRHR1P34998 444 aa6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 MAGEA10P43363 369 aaPredicted RBP6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 GZMKP49863 264 aa6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 SLC16A1P53985 500 aa6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 KIF23Q02241 960 aaPredicted RBP6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 MGAT2Q10469 447 aa6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 TTF1Q15361 905 aaPredicted RBP6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 FAM214AQ32MH5 1076 aa6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 PLEKHG6Q3KR16 790 aa6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 Q6ZSN1 163 aa6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 THEMISQ8N1K5 641 aaPredicted RBP6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 LILRA3Q8N6C8 439 aaPredicted RBP6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 MDM1Q8TC05 714 aa6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 DPF2Q92785 391 aa6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 FAM89AQ96GI7 184 aa6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 UHRF1Q96T88 793 aaPredicted RBP6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 TRPS1Q9UHF7 1281 aa6.05□□□□□ -1.44
SMCHD1-204ENST00000581226 LUC7L2Q9Y383 392 aaKnown RBP6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms