RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 SLFN12LQ6IEE8 588 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 ARMCX5Q6P1M9 558 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 TRAF7Q6Q0C0 670 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 BICD1Q96G01 975 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 FBXL18Q96ME1 805 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 CBWD1Q9BRT8 395 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 C11orf49Q9H6J7 331 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 TNFSF13BQ9Y275 285 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 SQORQ9Y6N5 450 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 LRRC10BA6NIK2 292 aa17.65■□□□□ 0.42
SS18-211ENST00000578954 MAPK13O15264 365 aa17.65■□□□□ 0.42
SS18-211ENST00000578954 B4GALT5O43286 388 aa17.65■□□□□ 0.42
SS18-211ENST00000578954 ATP1A3P13637 1013 aa17.65■□□□□ 0.42
SS18-211ENST00000578954 SFPQP23246 707 aaKnown RBP eCLIP17.65■□□□□ 0.42
SS18-211ENST00000578954 THPOP40225 353 aa17.65■□□□□ 0.42
SS18-211ENST00000578954 APTXQ7Z2E3 356 aaKnown RBP17.65■□□□□ 0.42
SS18-211ENST00000578954 UBE2Q1Q7Z7E8 422 aa17.65■□□□□ 0.42
SS18-211ENST00000578954 CNOT6LQ96LI5 555 aaKnown RBP17.65■□□□□ 0.42
SS18-211ENST00000578954 HSPBP1Q9NZL4 362 aa17.65■□□□□ 0.42
SS18-211ENST00000578954 LIMA1Q9UHB6 759 aaKnown RBP17.65■□□□□ 0.42
SS18-211ENST00000578954 A0A0B4J269 797 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 KCNJ18B7U540 433 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 TLR3O15455 904 aaKnown RBP17.64■□□□□ 0.41
SS18-211ENST00000578954 AKAP3O75969 853 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 ERLIN2O94905 339 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 CKBP12277 381 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 ARF4P18085 180 aaPredicted RBP17.64■□□□□ 0.41
SS18-211ENST00000578954 AXLP30530 894 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 MCL1Q07820 350 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 KCNJ12Q14500 433 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 TCP11X2Q5H9J9 407 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 ATF7IP2Q5U623 682 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 CCDC155Q8N6L0 562 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 XXYLT1Q8NBI6 393 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 BORCS6Q96GS4 357 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 PAWRQ96IZ0 340 aaKnown RBP17.64■□□□□ 0.41
SS18-211ENST00000578954 HAPLN2Q9GZV7 340 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 AGPAT5Q9NUQ2 364 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 GINS2Q9Y248 185 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 USP20Q9Y2K6 914 aa17.64■□□□□ 0.41
SS18-211ENST00000578954 A0A1B0GUA9 196 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 PITPNM1O00562 1244 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 AP5Z1O43299 807 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 FAM189A1O60320 539 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 CSDE1O75534 798 aaKnown RBP17.63■□□□□ 0.41
SS18-211ENST00000578954 CTSHP09668 335 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 HOXA11P31270 313 aaPredicted RBP17.63■□□□□ 0.41
SS18-211ENST00000578954 CASP4P49662 377 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 CYP2J2P51589 502 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 BFSP2Q13515 415 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 HSP90AA2PQ14568 343 aaPredicted RBP17.63■□□□□ 0.41
SS18-211ENST00000578954 TRIM60Q495X7 471 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 FBXO47Q5MNV8 452 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 ZNF618Q5T7W0 954 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 EEF1DP3Q658K8 133 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 MPZL3Q6UWV2 235 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 CATSPER4Q7RTX7 472 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 NECAB2Q7Z6G3 386 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 FRMD5Q7Z6J6 570 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 FAM228AQ86W67 206 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 POMGNT1Q8WZA1 660 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 EEF2KMTQ96G04 330 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 ZBTB45Q96K62 511 aaPredicted RBP17.63■□□□□ 0.41
SS18-211ENST00000578954 PDZD7Q9H5P4 517 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 KIAA1586Q9HCI6 787 aa17.63■□□□□ 0.41
SS18-211ENST00000578954 MAGEC2Q9UBF1 373 aaPredicted RBP17.63■□□□□ 0.41
SS18-211ENST00000578954 NOC2LQ9Y3T9 749 aaKnown RBP17.63■□□□□ 0.41
SS18-211ENST00000578954 N4BP3O15049 544 aa17.62■□□□□ 0.41
SS18-211ENST00000578954 CLDN3O15551 220 aa17.62■□□□□ 0.41
SS18-211ENST00000578954 EXOC3O60645 756 aa17.62■□□□□ 0.41
SS18-211ENST00000578954 EPB41P11171 864 aaKnown RBP17.62■□□□□ 0.41
SS18-211ENST00000578954 PSMC2P35998 433 aaKnown RBP17.62■□□□□ 0.41
SS18-211ENST00000578954 ATN1P54259 1190 aaPredicted RBP17.62■□□□□ 0.41
SS18-211ENST00000578954 FANCCQ00597 558 aa17.62■□□□□ 0.41
SS18-211ENST00000578954 ENPEPQ07075 957 aa17.62■□□□□ 0.41
SS18-211ENST00000578954 NOLC1Q14978 699 aaKnown RBP eCLIP17.62■□□□□ 0.41
SS18-211ENST00000578954 KRT31Q15323 416 aa17.62■□□□□ 0.41
SS18-211ENST00000578954 TRIM59Q8IWR1 403 aa17.62■□□□□ 0.41
SS18-211ENST00000578954 GPD1LQ8N335 351 aa17.62■□□□□ 0.41
SS18-211ENST00000578954 USP38Q8NB14 1042 aa17.62■□□□□ 0.41
SS18-211ENST00000578954 CCDC51Q96ER9 411 aa17.62■□□□□ 0.41
SS18-211ENST00000578954 CDT1Q9H211 546 aa17.62■□□□□ 0.41
SS18-211ENST00000578954 METTL14Q9HCE5 456 aaKnown RBP17.62■□□□□ 0.41
SS18-211ENST00000578954 AGO2Q9UKV8 859 aaKnown RBP17.62■□□□□ 0.41
SS18-211ENST00000578954 DCDC2CA8MYV0 355 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 EXTL3O43909 919 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 PQBP1O60828 265 aaKnown RBP17.61■□□□□ 0.41
SS18-211ENST00000578954 LDHAP00338 332 aaKnown RBP17.61■□□□□ 0.41
SS18-211ENST00000578954 MCF2P10911 925 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 SELPP16109 830 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 CDK11BP21127 795 aaKnown RBP17.61■□□□□ 0.41
SS18-211ENST00000578954 FGFR4P22455 802 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 POU5F1Q01860 360 aaKnown RBP17.61■□□□□ 0.41
SS18-211ENST00000578954 TLE2Q04725 743 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 FAAP100Q0VG06 881 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 HSP90AA4PQ58FG1 418 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 CEP135Q66GS9 1140 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 FAM43BQ6ZT52 329 aaPredicted RBP17.61■□□□□ 0.41
SS18-211ENST00000578954 FAM186BQ8IYM0 893 aa17.61■□□□□ 0.41
SS18-211ENST00000578954 ANKRD20A12PQ8NF67 263 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms