RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 CES5AQ6NT32 575 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 SYCE2Q6PIF2 218 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 AGMOQ6ZNB7 445 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 MRPL10Q7Z7H8 261 aaKnown RBP15.23■□□□□ 0.03
CCDC40-216ENST00000576241 DDX53Q86TM3 631 aaKnown RBP15.23■□□□□ 0.03
CCDC40-216ENST00000576241 TMEM173Q86WV6 379 aaPredicted RBP15.23■□□□□ 0.03
CCDC40-216ENST00000576241 CNNM3Q8NE01 707 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 CCDC51Q96ER9 411 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 IGSF21Q96ID5 467 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 FAM193BQ96PV7 902 aaPredicted RBP15.23■□□□□ 0.03
CCDC40-216ENST00000576241 MTMR9Q96QG7 549 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 ZBP1Q9H171 429 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 S1PR5Q9H228 398 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 UBN1Q9NPG3 1134 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 XPNPEP1Q9NQW7 623 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 STK39Q9UEW8 545 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 CLASP2O75122 1294 aaKnown RBP15.22■□□□□ 0.03
CCDC40-216ENST00000576241 SEC24BO95487 1268 aa15.22■□□□□ 0.03
CCDC40-216ENST00000576241 CTSAP10619 480 aa15.22■□□□□ 0.03
CCDC40-216ENST00000576241 ITGA4P13612 1032 aa15.22■□□□□ 0.03
CCDC40-216ENST00000576241 NCLP19338 710 aaKnown RBP15.22■□□□□ 0.03
CCDC40-216ENST00000576241 ATP2B1P20020 1258 aa15.22■□□□□ 0.03
CCDC40-216ENST00000576241 MCM7P33993 719 aa15.22■□□□□ 0.03
CCDC40-216ENST00000576241 SLC11A1P49279 550 aa15.22■□□□□ 0.03
CCDC40-216ENST00000576241 PTENP60484 403 aa15.22■□□□□ 0.03
CCDC40-216ENST00000576241 GUCY1B3Q02153 619 aa15.22■□□□□ 0.03
CCDC40-216ENST00000576241 ITIH3Q06033 890 aa15.22■□□□□ 0.03
CCDC40-216ENST00000576241 UBXN11Q5T124 520 aa15.22■□□□□ 0.03
CCDC40-216ENST00000576241 NOTUMQ6P988 496 aa15.22■□□□□ 0.03
CCDC40-216ENST00000576241 CCDC83Q8IWF9 413 aa15.22■□□□□ 0.03
CCDC40-216ENST00000576241 C8orf76Q96K31 380 aa15.22■□□□□ 0.03
CCDC40-216ENST00000576241 DNAJB4Q9UDY4 337 aa15.22■□□□□ 0.03
CCDC40-216ENST00000576241 POTEMA6NI47 508 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 WNT7AO00755 349 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 TSPAN1O60635 241 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 XRCC6P12956 609 aaKnown RBP eCLIP15.21■□□□□ 0.03
CCDC40-216ENST00000576241 RARRES1P49788 294 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 POU5F1BQ06416 359 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 ST3GAL1Q11201 340 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 CAPSQ13938 189 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 ZBTB33Q86T24 672 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 ZNF280BQ86YH2 543 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 HACE1Q8IYU2 909 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 PIGOQ8TEQ8 1089 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 BCL7CQ8WUZ0 217 aaPredicted RBP15.21■□□□□ 0.03
CCDC40-216ENST00000576241 AUTS2Q8WXX7 1259 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 LLPHQ9BRT6 129 aaKnown RBP15.21■□□□□ 0.03
CCDC40-216ENST00000576241 TMEM175Q9BSA9 504 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 TRIM6Q9C030 488 aaPredicted RBP15.21■□□□□ 0.03
CCDC40-216ENST00000576241 TUFT1Q9NNX1 390 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 DZANK1Q9NVP4 752 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 IRAK3Q9Y616 596 aa15.21■□□□□ 0.03
CCDC40-216ENST00000576241 USO1O60763 962 aaKnown RBP15.2■□□□□ 0.02
CCDC40-216ENST00000576241 POMCP01189 267 aa15.2■□□□□ 0.02
CCDC40-216ENST00000576241 ALDH2P05091 517 aa15.2■□□□□ 0.02
CCDC40-216ENST00000576241 GNL2Q13823 731 aaKnown RBP15.2■□□□□ 0.02
CCDC40-216ENST00000576241 IFNLR1Q8IU57 520 aaPredicted RBP15.2■□□□□ 0.02
CCDC40-216ENST00000576241 ASAP3Q8TDY4 903 aa15.2■□□□□ 0.02
CCDC40-216ENST00000576241 CPB2Q96IY4 423 aa15.2■□□□□ 0.02
CCDC40-216ENST00000576241 NECTIN4Q96NY8 510 aa15.2■□□□□ 0.02
CCDC40-216ENST00000576241 NFKBIZQ9BYH8 718 aa15.2■□□□□ 0.02
CCDC40-216ENST00000576241 CSRNP2Q9H175 543 aa15.2■□□□□ 0.02
CCDC40-216ENST00000576241 POLR3FQ9H1D9 316 aaPredicted RBP15.2■□□□□ 0.02
CCDC40-216ENST00000576241 TMEM60Q9H2L4 133 aa15.2■□□□□ 0.02
CCDC40-216ENST00000576241 ADAM7Q9H2U9 754 aa15.2■□□□□ 0.02
CCDC40-216ENST00000576241 TSHZ2Q9NRE2 1034 aa15.2■□□□□ 0.02
CCDC40-216ENST00000576241 FAN1Q9Y2M0 1017 aa15.2■□□□□ 0.02
CCDC40-216ENST00000576241 NR2E1Q9Y466 385 aa15.2■□□□□ 0.02
CCDC40-216ENST00000576241 IPPQ9Y573 584 aa15.2■□□□□ 0.02
CCDC40-216ENST00000576241 B4GALT3O60512 393 aa15.19■□□□□ 0.02
CCDC40-216ENST00000576241 DDHD2O94830 711 aa15.19■□□□□ 0.02
CCDC40-216ENST00000576241 GLRA2P23416 452 aa15.19■□□□□ 0.02
CCDC40-216ENST00000576241 ARL2P36404 184 aa15.19■□□□□ 0.02
CCDC40-216ENST00000576241 MLH1P40692 756 aa15.19■□□□□ 0.02
CCDC40-216ENST00000576241 MTHFRP42898 656 aa15.19■□□□□ 0.02
CCDC40-216ENST00000576241 AFF1P51825 1210 aaKnown RBP15.19■□□□□ 0.02
CCDC40-216ENST00000576241 HMGN5P82970 282 aaKnown RBP15.19■□□□□ 0.02
CCDC40-216ENST00000576241 MBTD1Q05BQ5 628 aa15.19■□□□□ 0.02
CCDC40-216ENST00000576241 ORC2Q13416 577 aaPredicted RBP15.19■□□□□ 0.02
CCDC40-216ENST00000576241 PTPN14Q15678 1187 aa15.19■□□□□ 0.02
CCDC40-216ENST00000576241 PPFIBP1Q86W92 1011 aa15.19■□□□□ 0.02
CCDC40-216ENST00000576241 FAM184AQ8NB25 1140 aa15.19■□□□□ 0.02
CCDC40-216ENST00000576241 SMG8Q8ND04 991 aaKnown RBP15.19■□□□□ 0.02
CCDC40-216ENST00000576241 MCPH1Q8NEM0 835 aa15.19■□□□□ 0.02
CCDC40-216ENST00000576241 ERMNQ8TAM6 284 aa15.19■□□□□ 0.02
CCDC40-216ENST00000576241 ZSCAN31Q96LW9 406 aaPredicted RBP15.19■□□□□ 0.02
CCDC40-216ENST00000576241 EMILIN2Q9BXX0 1053 aa15.19■□□□□ 0.02
CCDC40-216ENST00000576241 EIF2AQ9BY44 585 aaKnown RBP15.19■□□□□ 0.02
CCDC40-216ENST00000576241 FOXP1Q9H334 677 aaPredicted RBP15.19■□□□□ 0.02
CCDC40-216ENST00000576241 CEP250Q9BV73 2442 aa15.19■□□□□ 0.02
CCDC40-216ENST00000576241 MYO10Q9HD67 2058 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 CHD6Q8TD26 2715 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 ARL5CA6NH57 179 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 LRRIQ4A6NIV6 560 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 SPDYE4A6NLX3 237 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 NRP1O14786 923 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 NR1I2O75469 434 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 SSBP05455 408 aaKnown RBP eCLIP15.18■□□□□ 0.02
CCDC40-216ENST00000576241 CENPBP07199 599 aaPredicted RBP15.18■□□□□ 0.02
CCDC40-216ENST00000576241 OR52Z1P0C646 297 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms