RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 LCE4AQ5TA78 99 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 EFCAB2Q5VUJ9 269 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 Q6ZVL8 140 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 PPM1NQ8N819 430 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 Q8TCH9 128 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 SAMD11Q96NU1 681 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 TCF25Q9BQ70 676 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 CD248Q9HCU0 757 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 PLA2G3Q9NZ20 509 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 RCAN3Q9UKA8 241 aa6.34□□□□□ -1.39
NUP88-208ENST00000574087 ZRANB2O95218 330 aaKnown RBP eCLIP6.33□□□□□ -1.4
NUP88-208ENST00000574087 GASTP01350 101 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 GSPT1P15170 499 aaKnown RBP6.33□□□□□ -1.4
NUP88-208ENST00000574087 GYPEP15421 78 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 ADSLP30566 484 aaPredicted RBP6.33□□□□□ -1.4
NUP88-208ENST00000574087 CASRP41180 1078 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 WASP42768 502 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 DUSP2Q05923 314 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 MGAT2Q10469 447 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 FOXL1Q12952 345 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 TMEM240Q5SV17 173 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 ERICH6BQ5W0A0 696 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 FAM111BQ6SJ93 734 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 FAM180AQ6UWF9 173 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.33□□□□□ -1.4
NUP88-208ENST00000574087 ZNF480Q8WV37 535 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 HOOK2Q96ED9 719 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 WWC2-AS2Q96NR7 200 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 ADI1Q9BV57 179 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 TCF7L1Q9HCS4 588 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 GPRC5DQ9NZD1 345 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 NCDNQ9UBB6 729 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 TRPS1Q9UHF7 1281 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 ZBTB21Q9ULJ3 1066 aa6.33□□□□□ -1.4
NUP88-208ENST00000574087 THRAP3Q9Y2W1 955 aaKnown RBP6.33□□□□□ -1.4
NUP88-208ENST00000574087 K7ESM1 405 aa6.32□□□□□ -1.4
NUP88-208ENST00000574087 PPM1GO15355 546 aaPredicted RBP6.32□□□□□ -1.4
NUP88-208ENST00000574087 ZNF623O75123 536 aa6.32□□□□□ -1.4
NUP88-208ENST00000574087 ITGA10O75578 1167 aa6.32□□□□□ -1.4
NUP88-208ENST00000574087 SNUPNO95149 360 aaKnown RBP6.32□□□□□ -1.4
NUP88-208ENST00000574087 NPEPPSP55786 919 aa6.32□□□□□ -1.4
NUP88-208ENST00000574087 SEPT2Q15019 361 aa6.32□□□□□ -1.4
NUP88-208ENST00000574087 Q6ZSN1 163 aa6.32□□□□□ -1.4
NUP88-208ENST00000574087 POLNQ7Z5Q5 900 aa6.32□□□□□ -1.4
NUP88-208ENST00000574087 CMTR2Q8IYT2 770 aaKnown RBP6.32□□□□□ -1.4
NUP88-208ENST00000574087 THEMISQ8N1K5 641 aaPredicted RBP6.32□□□□□ -1.4
NUP88-208ENST00000574087 CPA6Q8N4T0 437 aa6.32□□□□□ -1.4
NUP88-208ENST00000574087 TTC9BQ8N6N2 239 aa6.32□□□□□ -1.4
NUP88-208ENST00000574087 OR2I1PQ8NGU4 316 aa6.32□□□□□ -1.4
NUP88-208ENST00000574087 NRG4Q8WWG1 115 aa6.32□□□□□ -1.4
NUP88-208ENST00000574087 TMEM176AQ96HP8 235 aa6.32□□□□□ -1.4
NUP88-208ENST00000574087 PUS7Q96PZ0 661 aaKnown RBP6.32□□□□□ -1.4
NUP88-208ENST00000574087 BTBD11A6QL63 1104 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 ABLIM3O94929 683 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 CRHR1P34998 444 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 MSX2P35548 267 aaPredicted RBP6.31□□□□□ -1.4
NUP88-208ENST00000574087 EPHB1P54762 984 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 ADKP55263 362 aaKnown RBP6.31□□□□□ -1.4
NUP88-208ENST00000574087 NOMO1Q15155 1222 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 ODR4Q5SWX8 454 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 OR5M3Q8NGP4 307 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.31□□□□□ -1.4
NUP88-208ENST00000574087 COA7Q96BR5 231 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 BORCS6Q96GS4 357 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 LOXL4Q96JB6 756 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 MPHOSPH9Q99550 1183 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 BCO1Q9HAY6 547 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 AASDHPPTQ9NRN7 309 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 DNM3Q9UQ16 869 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 JAG2Q9Y219 1238 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 SIK3Q9Y2K2 1263 aa6.31□□□□□ -1.4
NUP88-208ENST00000574087 LUC7L2Q9Y383 392 aaKnown RBP6.31□□□□□ -1.4
NUP88-208ENST00000574087 ADCY6O43306 1168 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 HOXA3O43365 443 aaPredicted RBP6.3□□□□□ -1.4
NUP88-208ENST00000574087 AKAP10O43572 662 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 STC2O76061 302 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 COMTP21964 271 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 ECHS1P30084 290 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 SREBF1P36956 1147 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 SLC6A9P48067 706 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 GZMKP49863 264 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 RAB27AP51159 221 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 MRPL49Q13405 166 aaKnown RBP6.3□□□□□ -1.4
NUP88-208ENST00000574087 MAMDC4Q6UXC1 1216 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 OR7D4Q8NG98 312 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 IL17RAQ96F46 866 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 ZNF512Q96ME7 567 aaPredicted RBP6.3□□□□□ -1.4
NUP88-208ENST00000574087 SERPINB13Q9UIV8 391 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 ST6GALNAC2Q9UJ37 374 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 SH3BP1Q9Y3L3 701 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 IPPQ9Y573 584 aa6.3□□□□□ -1.4
NUP88-208ENST00000574087 E2F8A0AVK6 867 aa6.29□□□□□ -1.4
NUP88-208ENST00000574087 KRTAP9-7A8MTY7 169 aa6.29□□□□□ -1.4
NUP88-208ENST00000574087 FAM171A2A8MVW0 826 aa6.29□□□□□ -1.4
NUP88-208ENST00000574087 HTRA2O43464 458 aaPredicted RBP6.29□□□□□ -1.4
NUP88-208ENST00000574087 ENDOD1O94919 500 aa6.29□□□□□ -1.4
NUP88-208ENST00000574087 S100BP04271 92 aaPredicted RBP6.29□□□□□ -1.4
NUP88-208ENST00000574087 EDNRBP24530 442 aa6.29□□□□□ -1.4
NUP88-208ENST00000574087 SLC16A1P53985 500 aa6.29□□□□□ -1.4
NUP88-208ENST00000574087 KIF23Q02241 960 aaPredicted RBP6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms