RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 SPRED2Q7Z698 418 aa12.14□□□□□ -0.47
CHD3-216ENST00000573936 TMCO2Q7Z6W1 182 aaPredicted RBP12.14□□□□□ -0.47
CHD3-216ENST00000573936 CCDC65Q8IXS2 484 aa12.14□□□□□ -0.47
CHD3-216ENST00000573936 HACE1Q8IYU2 909 aa12.14□□□□□ -0.47
CHD3-216ENST00000573936 CRIPAKQ8N1N5 446 aa12.14□□□□□ -0.47
CHD3-216ENST00000573936 MRPS27Q92552 414 aaKnown RBP12.14□□□□□ -0.47
CHD3-216ENST00000573936 ZNF689Q96CS4 500 aaPredicted RBP12.14□□□□□ -0.47
CHD3-216ENST00000573936 CCDC34Q96HJ3 373 aa12.14□□□□□ -0.47
CHD3-216ENST00000573936 CHAMP1Q96JM3 812 aa12.14□□□□□ -0.47
CHD3-216ENST00000573936 LRFN3Q9BTN0 628 aa12.14□□□□□ -0.47
CHD3-216ENST00000573936 CCDC113Q9H0I3 377 aa12.14□□□□□ -0.47
CHD3-216ENST00000573936 ZHX3Q9H4I2 956 aa12.14□□□□□ -0.47
CHD3-216ENST00000573936 GDPD2Q9HCC8 539 aa12.14□□□□□ -0.47
CHD3-216ENST00000573936 FAM105AQ9NUU6 356 aa12.14□□□□□ -0.47
CHD3-216ENST00000573936 KBTBD4Q9NVX7 518 aa12.14□□□□□ -0.47
CHD3-216ENST00000573936 ARHGAP28Q9P2N2 729 aa12.14□□□□□ -0.47
CHD3-216ENST00000573936 SEL1LQ9UBV2 794 aa12.14□□□□□ -0.47
CHD3-216ENST00000573936 MTCH2Q9Y6C9 303 aa12.14□□□□□ -0.47
CHD3-216ENST00000573936 TCF20Q9UGU0 1960 aaKnown RBP12.14□□□□□ -0.47
CHD3-216ENST00000573936 CNTNAP2Q9UHC6 1331 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 MICAL3Q7RTP6 2002 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 FAM237AA0A1B0GTK4 181 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 A0A1B0GUA9 196 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 A0A1B0GVL5 298 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 SLC16A4O15374 487 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 TRAK2O60296 914 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 SLFN14P0C7P3 912 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 MAPTP10636 758 aaKnown RBP12.13□□□□□ -0.47
CHD3-216ENST00000573936 PFKFB1P16118 471 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 ARF4P18085 180 aaPredicted RBP12.13□□□□□ -0.47
CHD3-216ENST00000573936 LIG1P18858 919 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 POU3F3P20264 500 aaPredicted RBP12.13□□□□□ -0.47
CHD3-216ENST00000573936 IBSPP21815 317 aaPredicted RBP12.13□□□□□ -0.47
CHD3-216ENST00000573936 SYKP43405 635 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 NCKAP1LP55160 1127 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 CACNB1Q02641 598 aaPredicted RBP12.13□□□□□ -0.47
CHD3-216ENST00000573936 TAP1Q03518 808 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 CNNM4Q6P4Q7 775 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 SLC27A1Q6PCB7 646 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 FAM178BQ8IXR5 827 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 CMTR2Q8IYT2 770 aaKnown RBP12.13□□□□□ -0.47
CHD3-216ENST00000573936 ABI1Q8IZP0 508 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 FIBCD1Q8N539 461 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 FSIP1Q8NA03 581 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 TMEM161BQ8NDZ6 487 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 SP7Q8TDD2 431 aaPredicted RBP12.13□□□□□ -0.47
CHD3-216ENST00000573936 KCNN1Q92952 543 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 CPB2Q96IY4 423 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 SAMD11Q96NU1 681 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 C7orf25Q9BPX7 421 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 ADPGKQ9BRR6 497 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 KIFC3Q9BVG8 833 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 MRPL4Q9BYD3 311 aaKnown RBP12.13□□□□□ -0.47
CHD3-216ENST00000573936 TRIM6Q9C030 488 aaPredicted RBP12.13□□□□□ -0.47
CHD3-216ENST00000573936 UBN1Q9NPG3 1134 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 HPSEQ9Y251 543 aa12.13□□□□□ -0.47
CHD3-216ENST00000573936 ADGRA3Q8IWK6 1321 aa12.12□□□□□ -0.47
CHD3-216ENST00000573936 LCHNA4D1U4 455 aa12.12□□□□□ -0.47
CHD3-216ENST00000573936 IDEP14735 1019 aa12.12□□□□□ -0.47
CHD3-216ENST00000573936 BTG3Q14201 252 aaPredicted RBP12.12□□□□□ -0.47
CHD3-216ENST00000573936 HAUS6Q7Z4H7 955 aa12.12□□□□□ -0.47
CHD3-216ENST00000573936 MRPL10Q7Z7H8 261 aaKnown RBP12.12□□□□□ -0.47
CHD3-216ENST00000573936 ZNF598Q86UK7 904 aaKnown RBP12.12□□□□□ -0.47
CHD3-216ENST00000573936 RNF169Q8NCN4 708 aa12.12□□□□□ -0.47
CHD3-216ENST00000573936 DNAJC19Q96DA6 116 aa12.12□□□□□ -0.47
CHD3-216ENST00000573936 TGS1Q96RS0 853 aaKnown RBP12.12□□□□□ -0.47
CHD3-216ENST00000573936 TMEM117Q9H0C3 514 aa12.12□□□□□ -0.47
CHD3-216ENST00000573936 ST6GALNAC4Q9H4F1 302 aa12.12□□□□□ -0.47
CHD3-216ENST00000573936 EPHX3Q9H6B9 360 aa12.12□□□□□ -0.47
CHD3-216ENST00000573936 PANK4Q9NVE7 773 aa12.12□□□□□ -0.47
CHD3-216ENST00000573936 SERTAD1Q9UHV2 236 aa12.12□□□□□ -0.47
CHD3-216ENST00000573936 RWDD3Q9Y3V2 267 aa12.12□□□□□ -0.47
CHD3-216ENST00000573936 PCDHB2Q9Y5E7 798 aa12.12□□□□□ -0.47
CHD3-216ENST00000573936 FRMD3A2A2Y4 597 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 LINC01553A4QN01 128 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 TBKBP1A7MCY6 615 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 K7ENM7 598 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 B4GALT5O43286 388 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 MYL1P05976 194 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 ITGA4P13612 1032 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 NDUFA8P51970 172 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 ASIC1P78348 528 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 ALCAMQ13740 583 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 DCAF4L1Q3SXM0 396 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 HERC4Q5GLZ8 1057 aaPredicted RBP12.11□□□□□ -0.47
CHD3-216ENST00000573936 UBXN11Q5T124 520 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 ATF7IP2Q5U623 682 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 KANK3Q6NY19 840 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 GDPD5Q8WTR4 605 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 HVCN1Q96D96 273 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 ACO2Q99798 780 aaKnown RBP12.11□□□□□ -0.47
CHD3-216ENST00000573936 TRIM9Q9C026 710 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 RC3H2Q9HBD1 1191 aaKnown RBP12.11□□□□□ -0.47
CHD3-216ENST00000573936 TNFSF13BQ9Y275 285 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 PCDHB13Q9Y5F0 798 aa12.11□□□□□ -0.47
CHD3-216ENST00000573936 PVALEFA0A1B0GWK0 134 aa12.1□□□□□ -0.47
CHD3-216ENST00000573936 CARNS1A5YM72 827 aa12.1□□□□□ -0.47
CHD3-216ENST00000573936 ACTN4O43707 911 aaKnown RBP12.1□□□□□ -0.47
CHD3-216ENST00000573936 ZNF202O95125 648 aa12.1□□□□□ -0.47
CHD3-216ENST00000573936 NPTXRO95502 500 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms