RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 HELQQ8TDG4 1101 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 CCDC51Q96ER9 411 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 CDK5RAP3Q96JB5 506 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 TRAIPQ9BWF2 469 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 IFT122Q9HBG6 1241 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 XPNPEP1Q9NQW7 623 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 AGPAT5Q9NUQ2 364 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 KIAA1024Q9UPX6 916 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 USP34Q70CQ2 3546 aa8.98□□□□□ -0.97
VPS53-214ENST00000572607 RCCD1A6NED2 376 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 LRRIQ4A6NIV6 560 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 PI4K2BG5E9Z4 385 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 K7ELQ4 463 aaPredicted RBP8.97□□□□□ -0.97
VPS53-214ENST00000572607 GRM6O15303 877 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 NCK2O43639 380 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 GLRA2P23416 452 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 PPM1AP35813 382 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 ARL2P36404 184 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 SLC19A1P41440 591 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 PTENP60484 403 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 ATP2C1P98194 919 aaPredicted RBP8.97□□□□□ -0.97
VPS53-214ENST00000572607 UBE3AQ05086 875 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 CAPSQ13938 189 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 PPP2R5AQ15172 486 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 ZRSR1Q15695 479 aaKnown RBP8.97□□□□□ -0.97
VPS53-214ENST00000572607 KMT5BQ4FZB7 885 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 TMEM31Q5JXX7 168 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 NOTUMQ6P988 496 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 EP400NLQ6ZTU2 488 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 HSCBQ8IWL3 235 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 C4orf32Q8N8J7 132 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 IGSF22Q8N9C0 903 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 DEPTORQ8TB45 409 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 URGCPQ8TCY9 931 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 ASAP3Q8TDY4 903 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 MICAL1Q8TDZ2 1067 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 POF1BQ8WVV4 589 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 INTS4Q96HW7 963 aaKnown RBP8.97□□□□□ -0.97
VPS53-214ENST00000572607 IFT74Q96LB3 600 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 ZNF558Q96NG5 402 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 TRIM6Q9C030 488 aaPredicted RBP8.97□□□□□ -0.97
VPS53-214ENST00000572607 C2orf40Q9H1Z8 148 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 BHMT2Q9H2M3 363 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 ALG13Q9NP73 1137 aaKnown RBP8.97□□□□□ -0.97
VPS53-214ENST00000572607 UBN1Q9NPG3 1134 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 FAM105AQ9NUU6 356 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 DDX19AQ9NUU7 478 aaKnown RBP8.97□□□□□ -0.97
VPS53-214ENST00000572607 TYW1Q9NV66 732 aaKnown RBP8.97□□□□□ -0.97
VPS53-214ENST00000572607 PUF60Q9UHX1 559 aaKnown RBP8.97□□□□□ -0.97
VPS53-214ENST00000572607 PLAGL2Q9UPG8 496 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 DNM3Q9UQ16 869 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 NLRC5Q86WI3 1866 aa8.97□□□□□ -0.97
VPS53-214ENST00000572607 A0A087WWV3 80 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 VWA3AA6NCI4 1184 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 ITGB1P05556 798 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 HSP90AA1P07900 732 aaKnown RBP8.96□□□□□ -0.98
VPS53-214ENST00000572607 LINC00271P0C7V0 271 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 ITGA4P13612 1032 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 CYP11B2P19099 503 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 KRT17Q04695 432 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 RNASELQ05823 741 aaKnown RBP8.96□□□□□ -0.98
VPS53-214ENST00000572607 MBTD1Q05BQ5 628 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 BMS1Q14692 1282 aaKnown RBP8.96□□□□□ -0.98
VPS53-214ENST00000572607 TCEAL5Q5H9L2 206 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 ARL6IP4Q66PJ3 421 aaKnown RBP8.96□□□□□ -0.98
VPS53-214ENST00000572607 ZNF598Q86UK7 904 aaKnown RBP8.96□□□□□ -0.98
VPS53-214ENST00000572607 KCTD17Q8N5Z5 321 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 COLGALT1Q8NBJ5 622 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 RASSF8Q8NHQ8 419 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 KIFAP3Q92845 792 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 CASD1Q96PB1 797 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 NFKBIZQ9BYH8 718 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 NT5C3AQ9H0P0 336 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 UBE2ZQ9H832 354 aaPredicted RBP8.96□□□□□ -0.98
VPS53-214ENST00000572607 MINDY3Q9H8M7 445 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 RSAD1Q9HA92 442 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 GPRC5CQ9NQ84 441 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 PRMT7Q9NVM4 692 aaPredicted RBP8.96□□□□□ -0.98
VPS53-214ENST00000572607 INPP5FQ9Y2H2 1132 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 PCDHB2Q9Y5E7 798 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 TTC3P53804 2025 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 CNTNAP2Q9UHC6 1331 aa8.96□□□□□ -0.98
VPS53-214ENST00000572607 MYO7AQ13402 2215 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.95□□□□□ -0.98
VPS53-214ENST00000572607 FSD2A1L4K1 749 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 TSPAN1O60635 241 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 ZNF623O75123 536 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 FGF18O76093 207 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 EYA4O95677 639 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 SSBP05455 408 aaKnown RBP eCLIP8.95□□□□□ -0.98
VPS53-214ENST00000572607 KCNA5P22460 613 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 UBA7P41226 1012 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 NAMPTP43490 491 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 ALDH7A1P49419 539 aaKnown RBP8.95□□□□□ -0.98
VPS53-214ENST00000572607 LONRF3Q496Y0 759 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 NOMO2Q5JPE7 1267 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 CLLU1OSQ5K130 101 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 ZNF787Q6DD87 383 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 PDE12Q6L8Q7 609 aaKnown RBP8.95□□□□□ -0.98
VPS53-214ENST00000572607 KCNT2Q6UVM3 1135 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms