RNA–Protein interactions for RNA: ENST00000568877.5

COMMD4-224, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 770 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-224ENST00000568877 UBXN11Q5T124 520 aa18.37■□□□□ 0.53
COMMD4-224ENST00000568877 PRPF38BQ5VTL8 546 aaKnown RBP18.37■□□□□ 0.53
COMMD4-224ENST00000568877 SLC27A1Q6PCB7 646 aa18.37■□□□□ 0.53
COMMD4-224ENST00000568877 CDR2LQ86X02 465 aaPredicted RBP18.37■□□□□ 0.53
COMMD4-224ENST00000568877 KIAA0895Q8NCT3 520 aa18.37■□□□□ 0.53
COMMD4-224ENST00000568877 ZNF507Q8TCN5 953 aa18.37■□□□□ 0.53
COMMD4-224ENST00000568877 SCFD1Q8WVM8 642 aa18.37■□□□□ 0.53
COMMD4-224ENST00000568877 BICD1Q96G01 975 aa18.37■□□□□ 0.53
COMMD4-224ENST00000568877 RNPC3Q96LT9 517 aaKnown RBP18.37■□□□□ 0.53
COMMD4-224ENST00000568877 KIAA1468Q9P260 1216 aa18.37■□□□□ 0.53
COMMD4-224ENST00000568877 EXOC7Q9UPT5 735 aa18.37■□□□□ 0.53
COMMD4-224ENST00000568877 SLC4A7Q9Y6M7 1214 aa18.37■□□□□ 0.53
COMMD4-224ENST00000568877 A0A0U1RQF3 1178 aa18.36■□□□□ 0.53
COMMD4-224ENST00000568877 HNRNPDLO14979 420 aaKnown RBP18.36■□□□□ 0.53
COMMD4-224ENST00000568877 SKIP12755 728 aa18.36■□□□□ 0.53
COMMD4-224ENST00000568877 LIG4P49917 911 aa18.36■□□□□ 0.53
COMMD4-224ENST00000568877 FAM189BP81408 668 aa18.36■□□□□ 0.53
COMMD4-224ENST00000568877 DEFB103AP81534 67 aa18.36■□□□□ 0.53
COMMD4-224ENST00000568877 EEF1DP3Q658K8 133 aa18.36■□□□□ 0.53
COMMD4-224ENST00000568877 TDHQ8IZJ6 230 aa18.36■□□□□ 0.53
COMMD4-224ENST00000568877 TMEM206Q9H813 350 aa18.36■□□□□ 0.53
COMMD4-224ENST00000568877 PTPRHQ9HD43 1115 aa18.36■□□□□ 0.53
COMMD4-224ENST00000568877 FAM105AQ9NUU6 356 aa18.36■□□□□ 0.53
COMMD4-224ENST00000568877 MAN1B1Q9UKM7 699 aa18.36■□□□□ 0.53
COMMD4-224ENST00000568877 GDAQ9Y2T3 454 aa18.36■□□□□ 0.53
COMMD4-224ENST00000568877 UBE4BO95155 1302 aa18.35■□□□□ 0.53
COMMD4-224ENST00000568877 TOM1L1O75674 476 aa18.35■□□□□ 0.53
COMMD4-224ENST00000568877 PROZP22891 400 aa18.35■□□□□ 0.53
COMMD4-224ENST00000568877 RAB27AP51159 221 aa18.35■□□□□ 0.53
COMMD4-224ENST00000568877 BMT2Q1RMZ1 405 aa18.35■□□□□ 0.53
COMMD4-224ENST00000568877 ZNF658Q5TYW1 1059 aaPredicted RBP18.35■□□□□ 0.53
COMMD4-224ENST00000568877 ECHDC2Q86YB7 292 aa18.35■□□□□ 0.53
COMMD4-224ENST00000568877 MYOCDQ8IZQ8 938 aa18.35■□□□□ 0.53
COMMD4-224ENST00000568877 SYCP3Q8IZU3 236 aa18.35■□□□□ 0.53
COMMD4-224ENST00000568877 PHOSPHO2Q8TCD6 241 aa18.35■□□□□ 0.53
COMMD4-224ENST00000568877 TOP1MTQ969P6 601 aa18.35■□□□□ 0.53
COMMD4-224ENST00000568877 SLC9A7Q96T83 725 aa18.35■□□□□ 0.53
COMMD4-224ENST00000568877 ADPGKQ9BRR6 497 aa18.35■□□□□ 0.53
COMMD4-224ENST00000568877 TCHPQ9BT92 498 aa18.35■□□□□ 0.53
COMMD4-224ENST00000568877 EIF2AQ9BY44 585 aaKnown RBP18.35■□□□□ 0.53
COMMD4-224ENST00000568877 GTPBP4Q9BZE4 634 aaKnown RBP18.35■□□□□ 0.53
COMMD4-224ENST00000568877 TRIM6Q9C030 488 aaPredicted RBP18.35■□□□□ 0.53
COMMD4-224ENST00000568877 RNF216Q9NWF9 866 aaPredicted RBP18.35■□□□□ 0.53
COMMD4-224ENST00000568877 PCDHB2Q9Y5E7 798 aa18.35■□□□□ 0.53
COMMD4-224ENST00000568877 ZNF623O75123 536 aa18.34■□□□□ 0.53
COMMD4-224ENST00000568877 NPTXRO95502 500 aa18.34■□□□□ 0.53
COMMD4-224ENST00000568877 IBSPP21815 317 aaPredicted RBP18.34■□□□□ 0.53
COMMD4-224ENST00000568877 HOXD13P35453 343 aa18.34■□□□□ 0.53
COMMD4-224ENST00000568877 DCAF4L1Q3SXM0 396 aa18.34■□□□□ 0.53
COMMD4-224ENST00000568877 ISM2Q6H9L7 571 aa18.34■□□□□ 0.53
COMMD4-224ENST00000568877 SLC39A4Q6P5W5 647 aa18.34■□□□□ 0.53
COMMD4-224ENST00000568877 MPZL3Q6UWV2 235 aa18.34■□□□□ 0.53
COMMD4-224ENST00000568877 APBB1IPQ7Z5R6 666 aaPredicted RBP18.34■□□□□ 0.53
COMMD4-224ENST00000568877 ZBTB45Q96K62 511 aaPredicted RBP18.34■□□□□ 0.53
COMMD4-224ENST00000568877 IKZF4Q9H2S9 585 aa18.34■□□□□ 0.53
COMMD4-224ENST00000568877 ELAC1Q9H777 363 aaKnown RBP18.34■□□□□ 0.53
COMMD4-224ENST00000568877 PCDHB7Q9Y5E2 793 aa18.34■□□□□ 0.53
COMMD4-224ENST00000568877 PDE4DIPQ5VU43 2346 aa18.33■□□□□ 0.53
COMMD4-224ENST00000568877 ANKRD63C9JTQ0 380 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 BIN1O00499 593 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 ABLIM1O14639 778 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 CLDN3O15551 220 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 KIF20AO95235 890 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 EOMESO95936 686 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 STAG3L1P0CL83 205 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 MCF2P10911 925 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 ATP2A2P16615 1042 aaKnown RBP18.33■□□□□ 0.52
COMMD4-224ENST00000568877 KNOP1Q1ED39 458 aaKnown RBP18.33■□□□□ 0.52
COMMD4-224ENST00000568877 KLHL40Q2TBA0 621 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 ZNF568Q3ZCX4 644 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 CCDC183Q5T5S1 534 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 MRPL10Q7Z7H8 261 aaKnown RBP18.33■□□□□ 0.52
COMMD4-224ENST00000568877 ZBTB33Q86T24 672 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 ZNF598Q86UK7 904 aaKnown RBP18.33■□□□□ 0.52
COMMD4-224ENST00000568877 NPAS4Q8IUM7 802 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 NELFCDQ8IXH7 590 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 SMYD4Q8IYR2 804 aaPredicted RBP18.33■□□□□ 0.52
COMMD4-224ENST00000568877 CRIPAKQ8N1N5 446 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 SMG8Q8ND04 991 aaKnown RBP18.33■□□□□ 0.52
COMMD4-224ENST00000568877 CDT1Q9H211 546 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 TMEM161AQ9NX61 479 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 ANKFY1Q9P2R3 1169 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 LRFN2Q9ULH4 789 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 MAPK8IP1Q9UQF2 711 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 COLQQ9Y215 455 aaPredicted RBP18.33■□□□□ 0.52
COMMD4-224ENST00000568877 IPPQ9Y573 584 aa18.33■□□□□ 0.52
COMMD4-224ENST00000568877 MICAL3Q7RTP6 2002 aa18.32■□□□□ 0.52
COMMD4-224ENST00000568877 TISP43B9A030 160 aa18.32■□□□□ 0.52
COMMD4-224ENST00000568877 UPP2O95045 317 aa18.32■□□□□ 0.52
COMMD4-224ENST00000568877 ATF7P17544 494 aaPredicted RBP18.32■□□□□ 0.52
COMMD4-224ENST00000568877 MATR3P43243 847 aaKnown RBP eCLIP18.32■□□□□ 0.52
COMMD4-224ENST00000568877 MCL1Q07820 350 aa18.32■□□□□ 0.52
COMMD4-224ENST00000568877 MORC3Q14149 939 aa18.32■□□□□ 0.52
COMMD4-224ENST00000568877 NOLC1Q14978 699 aaKnown RBP eCLIP18.32■□□□□ 0.52
COMMD4-224ENST00000568877 NFKBIBQ15653 356 aa18.32■□□□□ 0.52
COMMD4-224ENST00000568877 SLFN12LQ6IEE8 588 aa18.32■□□□□ 0.52
COMMD4-224ENST00000568877 TMCO2Q7Z6W1 182 aaPredicted RBP18.32■□□□□ 0.52
COMMD4-224ENST00000568877 HERC6Q8IVU3 1022 aa18.32■□□□□ 0.52
COMMD4-224ENST00000568877 GUF1Q8N442 669 aaKnown RBP18.32■□□□□ 0.52
COMMD4-224ENST00000568877 TRIML1Q8N9V2 468 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms