RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 HACE1Q8IYU2 909 aa18.74■□□□□ 0.59
CLN3-231ENST00000568422 TDRD5Q8NAT2 981 aaKnown RBP18.74■□□□□ 0.59
CLN3-231ENST00000568422 NSUN7Q8NE18 718 aaKnown RBP18.74■□□□□ 0.59
CLN3-231ENST00000568422 CCDC43Q96MW1 224 aaKnown RBP18.74■□□□□ 0.59
CLN3-231ENST00000568422 KLHL5Q96PQ7 755 aa18.74■□□□□ 0.59
CLN3-231ENST00000568422 CSRNP2Q9H175 543 aa18.74■□□□□ 0.59
CLN3-231ENST00000568422 SFXN1Q9H9B4 322 aa18.74■□□□□ 0.59
CLN3-231ENST00000568422 PPP4R2Q9NY27 417 aa18.74■□□□□ 0.59
CLN3-231ENST00000568422 CDH22Q9UJ99 828 aa18.74■□□□□ 0.59
CLN3-231ENST00000568422 DBR1Q9UK59 544 aaKnown RBP18.74■□□□□ 0.59
CLN3-231ENST00000568422 IPPQ9Y573 584 aa18.74■□□□□ 0.59
CLN3-231ENST00000568422 ARL5CA6NH57 179 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 INO80B-WBP1J3KQ70 363 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 DTNBO60941 627 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 LILRB3O75022 631 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 NR1I2O75469 434 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 KLRC2P26717 231 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 ARL2P36404 184 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 TXKP42681 527 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 CLCN4P51793 760 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 AFF1P51825 1210 aaKnown RBP18.73■□□□□ 0.59
CLN3-231ENST00000568422 NUBP1P53384 320 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 MBTD1Q05BQ5 628 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 IER5LQ5T953 404 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 C12orf76Q8N812 135 aaPredicted RBP18.73■□□□□ 0.59
CLN3-231ENST00000568422 PRSS33Q8NF86 280 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 MTMR9Q96QG7 549 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 TRIM6Q9C030 488 aaPredicted RBP18.73■□□□□ 0.59
CLN3-231ENST00000568422 IRF2BPLQ9H1B7 796 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 DPP7Q9UHL4 492 aa18.73■□□□□ 0.59
CLN3-231ENST00000568422 ZMYM2Q9UBW7 1377 aa18.72■□□□□ 0.59
CLN3-231ENST00000568422 LARGE1O95461 756 aa18.72■□□□□ 0.59
CLN3-231ENST00000568422 SOD2P04179 222 aa18.72■□□□□ 0.59
CLN3-231ENST00000568422 CNPP09543 421 aaKnown RBP18.72■□□□□ 0.59
CLN3-231ENST00000568422 RARRES1P49788 294 aa18.72■□□□□ 0.59
CLN3-231ENST00000568422 NEK4P51957 841 aa18.72■□□□□ 0.59
CLN3-231ENST00000568422 CAPSQ13938 189 aa18.72■□□□□ 0.59
CLN3-231ENST00000568422 ERICH6BQ5W0A0 696 aa18.72■□□□□ 0.59
CLN3-231ENST00000568422 ELMSAN1Q6PJG2 1045 aa18.72■□□□□ 0.59
CLN3-231ENST00000568422 GPR149Q86SP6 731 aa18.72■□□□□ 0.59
CLN3-231ENST00000568422 COLGALT2Q8IYK4 626 aa18.72■□□□□ 0.59
CLN3-231ENST00000568422 EIF2AQ9BY44 585 aaKnown RBP18.72■□□□□ 0.59
CLN3-231ENST00000568422 GIT1Q9Y2X7 761 aa18.72■□□□□ 0.59
CLN3-231ENST00000568422 ZDBF2Q9HCK1 2354 aa18.72■□□□□ 0.59
CLN3-231ENST00000568422 SPDYE4A6NLX3 237 aa18.71■□□□□ 0.59
CLN3-231ENST00000568422 URODP06132 367 aa18.71■□□□□ 0.59
CLN3-231ENST00000568422 ADH1AP07327 375 aa18.71■□□□□ 0.59
CLN3-231ENST00000568422 WEE2P0C1S8 567 aa18.71■□□□□ 0.59
CLN3-231ENST00000568422 AVPR2P30518 371 aa18.71■□□□□ 0.59
CLN3-231ENST00000568422 DSC1Q08554 894 aa18.71■□□□□ 0.59
CLN3-231ENST00000568422 SAFBQ15424 915 aaKnown RBP eCLIP18.71■□□□□ 0.59
CLN3-231ENST00000568422 TMC5Q6UXY8 1006 aa18.71■□□□□ 0.59
CLN3-231ENST00000568422 C15orf39Q6ZRI6 1047 aa18.71■□□□□ 0.59
CLN3-231ENST00000568422 ASAP3Q8TDY4 903 aa18.71■□□□□ 0.59
CLN3-231ENST00000568422 ACSF2Q96CM8 615 aaPredicted RBP18.71■□□□□ 0.59
CLN3-231ENST00000568422 CPB2Q96IY4 423 aa18.71■□□□□ 0.59
CLN3-231ENST00000568422 RPS6KC1Q96S38 1066 aa18.71■□□□□ 0.59
CLN3-231ENST00000568422 GAD1Q99259 594 aa18.71■□□□□ 0.59
CLN3-231ENST00000568422 HERC2P3Q9BVR0 1158 aa18.71■□□□□ 0.59
CLN3-231ENST00000568422 TUFT1Q9NNX1 390 aa18.71■□□□□ 0.59
CLN3-231ENST00000568422 C2orf16Q68DN1 1984 aa18.71■□□□□ 0.59
CLN3-231ENST00000568422 MTCL1Q9Y4B5 1905 aaKnown RBP18.7■□□□□ 0.58
CLN3-231ENST00000568422 EFEMP2O95967 443 aa18.7■□□□□ 0.58
CLN3-231ENST00000568422 C1RP00736 705 aa18.7■□□□□ 0.58
CLN3-231ENST00000568422 SSBP05455 408 aaKnown RBP eCLIP18.7■□□□□ 0.58
CLN3-231ENST00000568422 ARF4P18085 180 aaPredicted RBP18.7■□□□□ 0.58
CLN3-231ENST00000568422 GLRA2P23416 452 aa18.7■□□□□ 0.58
CLN3-231ENST00000568422 MLH1P40692 756 aa18.7■□□□□ 0.58
CLN3-231ENST00000568422 OR1G1P47890 313 aa18.7■□□□□ 0.58
CLN3-231ENST00000568422 AMHR2Q16671 573 aa18.7■□□□□ 0.58
CLN3-231ENST00000568422 KANK3Q6NY19 840 aa18.7■□□□□ 0.58
CLN3-231ENST00000568422 SLC27A1Q6PCB7 646 aa18.7■□□□□ 0.58
CLN3-231ENST00000568422 CYP26C1Q6V0L0 522 aa18.7■□□□□ 0.58
CLN3-231ENST00000568422 OTOP3Q7RTS5 596 aa18.7■□□□□ 0.58
CLN3-231ENST00000568422 CMASQ8NFW8 434 aaPredicted RBP18.7■□□□□ 0.58
CLN3-231ENST00000568422 COLEC11Q9BWP8 271 aa18.7■□□□□ 0.58
CLN3-231ENST00000568422 RNF39Q9H2S5 420 aa18.7■□□□□ 0.58
CLN3-231ENST00000568422 MARCH5Q9NX47 278 aa18.7■□□□□ 0.58
CLN3-231ENST00000568422 DAXXQ9UER7 740 aaPredicted RBP18.7■□□□□ 0.58
CLN3-231ENST00000568422 LIMD1Q9UGP4 676 aa18.7■□□□□ 0.58
CLN3-231ENST00000568422 PRG3Q9Y2Y8 225 aaPredicted RBP18.7■□□□□ 0.58
CLN3-231ENST00000568422 PLXNA3P51805 1871 aa18.69■□□□□ 0.58
CLN3-231ENST00000568422 A0A1B0GUA9 196 aa18.69■□□□□ 0.58
CLN3-231ENST00000568422 JAK2O60674 1132 aa18.69■□□□□ 0.58
CLN3-231ENST00000568422 BRD1O95696 1058 aa18.69■□□□□ 0.58
CLN3-231ENST00000568422 GLUD2P49448 558 aa18.69■□□□□ 0.58
CLN3-231ENST00000568422 VCPP55072 806 aaKnown RBP18.69■□□□□ 0.58
CLN3-231ENST00000568422 TCF15Q12870 199 aa18.69■□□□□ 0.58
CLN3-231ENST00000568422 CCDC149Q6ZUS6 474 aa18.69■□□□□ 0.58
CLN3-231ENST00000568422 GPR65Q8IYL9 337 aa18.69■□□□□ 0.58
CLN3-231ENST00000568422 RNF168Q8IYW5 571 aaPredicted RBP18.69■□□□□ 0.58
CLN3-231ENST00000568422 MCPH1Q8NEM0 835 aa18.69■□□□□ 0.58
CLN3-231ENST00000568422 PIGOQ8TEQ8 1089 aa18.69■□□□□ 0.58
CLN3-231ENST00000568422 PRIMPOLQ96LW4 560 aa18.69■□□□□ 0.58
CLN3-231ENST00000568422 RHOBTB2Q9BYZ6 727 aa18.69■□□□□ 0.58
CLN3-231ENST00000568422 POLR3FQ9H1D9 316 aaPredicted RBP18.69■□□□□ 0.58
CLN3-231ENST00000568422 RXFP1Q9HBX9 757 aa18.69■□□□□ 0.58
CLN3-231ENST00000568422 HES2Q9Y543 173 aa18.69■□□□□ 0.58
CLN3-231ENST00000568422 C2CD2LO14523 706 aa18.68■□□□□ 0.58
CLN3-231ENST00000568422 SCNN1GP51170 649 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms