RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 ACAP3Q96P50 834 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 KIFC3Q9BVG8 833 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 TMEM117Q9H0C3 514 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 FZD8Q9H461 694 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 RSAD1Q9HA92 442 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 TNFSF13BQ9Y275 285 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 GIT1Q9Y2X7 761 aa11.73□□□□□ -0.53
TPM1-229ENST00000561242 SCN10AQ9Y5Y9 1956 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 TMEM265A0A087WTH1 108 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 A0A1B0GUA9 196 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 KIAA0391O15091 583 aaKnown RBP11.72□□□□□ -0.53
TPM1-229ENST00000561242 CALUO43852 315 aaPredicted RBP11.72□□□□□ -0.53
TPM1-229ENST00000561242 ALDH2P05091 517 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 MCF2P10911 925 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 DNAJB2P25686 324 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 RPL13P26373 211 aaKnown RBP11.72□□□□□ -0.53
TPM1-229ENST00000561242 RABGGTBP53611 331 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 NCKAP1LP55160 1127 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 DEFB103AP81534 67 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 COASYQ13057 564 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 ARMCX5Q6P1M9 558 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 MPZL3Q6UWV2 235 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 ZNF720Q7Z2F6 126 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 THNSL1Q8IYQ7 743 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 CMTR2Q8IYT2 770 aaKnown RBP11.72□□□□□ -0.53
TPM1-229ENST00000561242 MICAL1Q8TDZ2 1067 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 TGS1Q96RS0 853 aaKnown RBP11.72□□□□□ -0.53
TPM1-229ENST00000561242 MSTO1Q9BUK6 570 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 TARS2Q9BW92 718 aaKnown RBP11.72□□□□□ -0.53
TPM1-229ENST00000561242 NKX2-4Q9H2Z4 354 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 RPF1Q9H9Y2 349 aaKnown RBP11.72□□□□□ -0.53
TPM1-229ENST00000561242 KIAA1586Q9HCI6 787 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 OLFML3Q9NRN5 406 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 CXXC1Q9P0U4 656 aaPredicted RBP11.72□□□□□ -0.53
TPM1-229ENST00000561242 CGNQ9P2M7 1197 aaKnown RBP11.72□□□□□ -0.53
TPM1-229ENST00000561242 STK39Q9UEW8 545 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 GDAQ9Y2T3 454 aa11.72□□□□□ -0.53
TPM1-229ENST00000561242 C9IYK1 514 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 ZNF623O75123 536 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 LAG3P18627 525 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 NMT1P30419 496 aaKnown RBP11.71□□□□□ -0.53
TPM1-229ENST00000561242 CTNNB1P35222 781 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 ZNF131P52739 623 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 SNRPFP62306 86 aaKnown RBP11.71□□□□□ -0.53
TPM1-229ENST00000561242 NOLC1Q14978 699 aaKnown RBP eCLIP11.71□□□□□ -0.53
TPM1-229ENST00000561242 E2F4Q16254 413 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 TPD52L1Q16890 204 aaPredicted RBP11.71□□□□□ -0.53
TPM1-229ENST00000561242 NAALADL2Q58DX5 795 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 NOMO2Q5JPE7 1267 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 CD302Q8IX05 232 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 LRRC43Q8N309 656 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 TMEM161BQ8NDZ6 487 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 HELQQ8TDG4 1101 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 BSNDQ8WZ55 320 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 CHAMP1Q96JM3 812 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 GSDMAQ96QA5 445 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 ACO2Q99798 780 aaKnown RBP11.71□□□□□ -0.53
TPM1-229ENST00000561242 TRAIPQ9BWF2 469 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 COLEC11Q9BWP8 271 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 GBP3Q9H0R5 595 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 TMX1Q9H3N1 280 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 MINDY3Q9H8M7 445 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 SLC39A2Q9NP94 309 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 SLC38A7Q9NVC3 462 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 ARHGAP28Q9P2N2 729 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 DACH1Q9UI36 760 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 HPSEQ9Y251 543 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 IPPQ9Y573 584 aa11.71□□□□□ -0.53
TPM1-229ENST00000561242 UBE4BO95155 1302 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 A0A087X0B3 334 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.7□□□□□ -0.54
TPM1-229ENST00000561242 GRXCR1A8MXD5 290 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 EIF3DO15371 548 aaKnown RBP eCLIP11.7□□□□□ -0.54
TPM1-229ENST00000561242 B4GALT5O43286 388 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 ACTN4O43707 911 aaKnown RBP11.7□□□□□ -0.54
TPM1-229ENST00000561242 DGKIO75912 1065 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 FGFR1OPO95684 399 aaKnown RBP11.7□□□□□ -0.54
TPM1-229ENST00000561242 THP07101 528 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 CA3P07451 260 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 CLTAP09496 248 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 IGFBP4P22692 258 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 PPM1AP35813 382 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 OSTNP61366 133 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 FAM189BP81408 668 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 GTF2BQ00403 316 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 PPP2R3AQ06190 1150 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 CUL4BQ13620 913 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 SURF1Q15526 300 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 KMT5BQ4FZB7 885 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 FBXO22Q8NEZ5 403 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 CACTINQ8WUQ7 758 aaKnown RBP11.7□□□□□ -0.54
TPM1-229ENST00000561242 ARNTL2Q8WYA1 636 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 ZNF558Q96NG5 402 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 FNBP1Q96RU3 617 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 C11orf84Q9BUA3 381 aaPredicted RBP11.7□□□□□ -0.54
TPM1-229ENST00000561242 PBX4Q9BYU1 374 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 ST6GALNAC4Q9H4F1 302 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 ZNF576Q9H609 170 aa11.7□□□□□ -0.54
TPM1-229ENST00000561242 AGO2Q9UKV8 859 aaKnown RBP11.7□□□□□ -0.54
TPM1-229ENST00000561242 FRMD4BQ9Y2L6 1034 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms