RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 AGBL2Q5U5Z8 902 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 CCDC174Q6PII3 467 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 CPNE8Q86YQ8 564 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 JAMLQ86YT9 394 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 MKL1Q969V6 931 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 CRAMP1Q96RY5 1269 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 HSD17B14Q9BPX1 270 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 SH2D3AQ9BRG2 576 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 ERP44Q9BS26 406 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 RAB17Q9H0T7 212 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 TMX4Q9H1E5 349 aaPredicted RBP12.19□□□□□ -0.46
CUX1-218ENST00000560541 PI4KBQ9UBF8 816 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 USP21Q9UK80 565 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 IGLV3-22A0A075B6J6 115 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 GOLGA6L10A0A0M3HER8 536 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 GNAT1P11488 350 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 NPEPPSP55786 919 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 BYSLQ13895 437 aaKnown RBP12.19□□□□□ -0.46
CUX1-218ENST00000560541 ABCB5Q2M3G0 1257 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 BZW1Q7L1Q6 419 aaKnown RBP12.19□□□□□ -0.46
CUX1-218ENST00000560541 OTOP1Q7RTM1 612 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 CACNA2D3Q8IZS8 1091 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 SEC14L1Q92503 715 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 POLR3CQ9BUI4 534 aaPredicted RBP12.19□□□□□ -0.46
CUX1-218ENST00000560541 EPB41L4BQ9H329 900 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 PTPN22Q9Y2R2 807 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 ALG6Q9Y672 507 aa12.19□□□□□ -0.46
CUX1-218ENST00000560541 TAF1LQ8IZX4 1826 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 NCANO14594 1321 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 POLRMTO00411 1230 aaKnown RBP12.18□□□□□ -0.46
CUX1-218ENST00000560541 FOSP01100 380 aaPredicted RBP12.18□□□□□ -0.46
CUX1-218ENST00000560541 BMP3P12645 472 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 GAP43P17677 238 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 ANXA13P27216 316 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 HHIPL2Q6UWX4 724 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 ZNF720Q7Z2F6 126 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 CCDC113Q9H0I3 377 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 UBE2TQ9NPD8 197 aaPredicted RBP12.18□□□□□ -0.46
CUX1-218ENST00000560541 SUGT1Q9Y2Z0 365 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 A0A1W2PRG0 241 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 RBM47A0AV96 593 aaKnown RBP12.18□□□□□ -0.46
CUX1-218ENST00000560541 SLC26A4O43511 780 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 FGFR4P22455 802 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 MAGEA8P43361 318 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 SLC8A3P57103 927 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 IFI35P80217 286 aaPredicted RBP12.18□□□□□ -0.46
CUX1-218ENST00000560541 SLC29A2Q14542 456 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 MESDQ14696 234 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 DUPD1Q68J44 220 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 RINLQ6ZS11 566 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 KAT5Q92993 513 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 RNF25Q96BH1 459 aaPredicted RBP12.18□□□□□ -0.46
CUX1-218ENST00000560541 ELMO3Q96BJ8 720 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 BTBD6Q96KE9 485 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 FIZ1Q96SL8 496 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 CARD9Q9H257 536 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 AZI2Q9H6S1 392 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 ZDHHC18Q9NUE0 388 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 GAS7O60861 476 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 FTLP02792 175 aaPredicted RBP12.18□□□□□ -0.46
CUX1-218ENST00000560541 CHN1P15882 459 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 ECE1P42892 770 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 PMS2P54278 862 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 KIAA1755Q5JYT7 1200 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 GKAP1Q5VSY0 366 aaPredicted RBP12.18□□□□□ -0.46
CUX1-218ENST00000560541 DENND2CQ68D51 928 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 ZDHHC14Q8IZN3 488 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 ZSWIM2Q8NEG5 633 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 PLEKHG4BQ96PX9 1271 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 SYT11Q9BT88 431 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 TRIM4Q9C037 500 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 PHACTR1Q9C0D0 580 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 SEMA4AQ9H3S1 761 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 PRR12Q9ULL5 1215 aa12.18□□□□□ -0.46
CUX1-218ENST00000560541 KIF13BQ9NQT8 1826 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 TCRBV7S2A1N4TA0A589 114 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 EIF3DO15371 548 aaKnown RBP eCLIP12.17□□□□□ -0.46
CUX1-218ENST00000560541 CIITAP33076 1130 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 GCLMP48507 274 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 MAPK7Q13164 816 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 RRP1BQ14684 758 aaKnown RBP12.17□□□□□ -0.46
CUX1-218ENST00000560541 CCDC38Q502W7 563 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 ANKRD20A8PQ5CZ79 823 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 MIS18BP1Q6P0N0 1132 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 ZDHHC24Q6UX98 284 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 TMEM179Q6ZVK1 233 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 CCDC25Q86WR0 208 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 ARHGEF19Q8IW93 802 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 TRIM42Q8IWZ5 723 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 NEK9Q8TD19 979 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 BICD1Q96G01 975 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 TRPC6Q9Y210 931 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 EMSYQ7Z589 1322 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 ANKRD62A6NC57 917 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 KIAA0391O15091 583 aaKnown RBP12.17□□□□□ -0.46
CUX1-218ENST00000560541 ZSCAN9O15535 394 aaPredicted RBP12.17□□□□□ -0.46
CUX1-218ENST00000560541 VCAM1P19320 739 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 RPL21P46778 160 aaKnown RBP12.17□□□□□ -0.46
CUX1-218ENST00000560541 IFNAR2P48551 515 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 BFSP1Q12934 665 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms