RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 DACT1Q9NYF0 836 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 DNM3Q9UQ16 869 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 REV3LO60673 3130 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 TRANK1O15050 2925 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 GRM6O15303 877 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 XRCC6P12956 609 aaKnown RBP eCLIP10.68□□□□□ -0.7
SPG11-214ENST00000558989 BMPR1AP36894 532 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 PTENP60484 403 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 CABP7Q86V35 215 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 CMTR2Q8IYT2 770 aaKnown RBP10.68□□□□□ -0.7
SPG11-214ENST00000558989 GPATCH11Q8N954 259 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 RUSC1Q9BVN2 902 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 GBP3Q9H0R5 595 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 FAM105AQ9NUU6 356 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 RNF19AQ9NV58 838 aa10.68□□□□□ -0.7
SPG11-214ENST00000558989 UNC80Q8N2C7 3258 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 NPHP3-ACAD11A0A0J9YXS1 232 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 SFI1A8K8P3 1242 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 TSPAN1O60635 241 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 LINC00271P0C7V0 271 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 ATF7P17544 494 aaPredicted RBP10.67□□□□□ -0.7
SPG11-214ENST00000558989 CYP11B2P19099 503 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 FAM189BP81408 668 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 MBTD1Q05BQ5 628 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 COL19A1Q14993 1142 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 CLLU1OSQ5K130 101 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 KLHL23Q8NBE8 558 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 MCPH1Q8NEM0 835 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 PRR7Q8TB68 274 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 CLIC6Q96NY7 704 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 CASD1Q96PB1 797 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 EIF2AQ9BY44 585 aaKnown RBP10.67□□□□□ -0.7
SPG11-214ENST00000558989 AGPAT5Q9NUQ2 364 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 HES2Q9Y543 173 aa10.67□□□□□ -0.7
SPG11-214ENST00000558989 A0A0U1RQF3 1178 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 CCDC169A6NNP5 214 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 NT5C1B-RDH14C9J2C7 533 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 H3BNC9 293 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 CREB3O43889 395 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 LZTS3O60299 673 aaPredicted RBP10.66□□□□□ -0.7
SPG11-214ENST00000558989 EYA4O95677 639 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 HOXA11P31270 313 aaPredicted RBP10.66□□□□□ -0.7
SPG11-214ENST00000558989 UBA7P41226 1012 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 TFF2Q03403 129 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 PKP1Q13835 747 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 KARSQ15046 597 aaKnown RBP10.66□□□□□ -0.7
SPG11-214ENST00000558989 ARL6IP4Q66PJ3 421 aaKnown RBP10.66□□□□□ -0.7
SPG11-214ENST00000558989 LRRC55Q6ZSA7 311 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 THNSL1Q8IYQ7 743 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 DEPTORQ8TB45 409 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 SAMD11Q96NU1 681 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 USP28Q96RU2 1077 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 CSRNP2Q9H175 543 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 CHST12Q9NRB3 414 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 PCDHB2Q9Y5E7 798 aa10.66□□□□□ -0.7
SPG11-214ENST00000558989 SPTBN5Q9NRC6 3674 aaKnown RBP10.66□□□□□ -0.7
SPG11-214ENST00000558989 TTLL13PA6NNM8 815 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 HIP1RO75146 1068 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 NPTXRO95502 500 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 ITGB1P05556 798 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 ARF4P18085 180 aaPredicted RBP10.65□□□□□ -0.7
SPG11-214ENST00000558989 CA8P35219 290 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 PEX3P56589 373 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 UBXN11Q5T124 520 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 USP49Q70CQ1 688 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 ZBTB8OSQ8IWT0 167 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 CLP1Q92989 425 aaKnown RBP10.65□□□□□ -0.7
SPG11-214ENST00000558989 CALML4Q96GE6 196 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 EPSTI1Q96J88 318 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 IFT74Q96LB3 600 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 C11orf84Q9BUA3 381 aaPredicted RBP10.65□□□□□ -0.7
SPG11-214ENST00000558989 PANK2Q9BZ23 570 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 TRIM6Q9C030 488 aaPredicted RBP10.65□□□□□ -0.7
SPG11-214ENST00000558989 TMEM117Q9H0C3 514 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 IGFLR1Q9H665 355 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 CWH43Q9H720 699 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 ELAC1Q9H777 363 aaKnown RBP10.65□□□□□ -0.7
SPG11-214ENST00000558989 PCDHGC5Q9Y5F6 944 aa10.65□□□□□ -0.7
SPG11-214ENST00000558989 SPTLC1O15269 473 aa10.65□□□□□ -0.71
SPG11-214ENST00000558989 ATP9BO43861 1147 aa10.65□□□□□ -0.71
SPG11-214ENST00000558989 ZC3H11AO75152 810 aaKnown RBP eCLIP10.65□□□□□ -0.71
SPG11-214ENST00000558989 PLA2G4BP0C869 781 aa10.65□□□□□ -0.71
SPG11-214ENST00000558989 MUTP22033 750 aa10.65□□□□□ -0.71
SPG11-214ENST00000558989 DNAJB1P25685 340 aa10.65□□□□□ -0.71
SPG11-214ENST00000558989 AFF1P51825 1210 aaKnown RBP10.65□□□□□ -0.71
SPG11-214ENST00000558989 FOXK1P85037 733 aa10.65□□□□□ -0.71
SPG11-214ENST00000558989 RNASELQ05823 741 aaKnown RBP10.65□□□□□ -0.71
SPG11-214ENST00000558989 NCBP1Q09161 790 aaKnown RBP10.65□□□□□ -0.71
SPG11-214ENST00000558989 MRPL58Q14197 206 aaKnown RBP10.65□□□□□ -0.71
SPG11-214ENST00000558989 STK38Q15208 465 aa10.65□□□□□ -0.71
SPG11-214ENST00000558989 PTPAQ15257 358 aa10.65□□□□□ -0.71
SPG11-214ENST00000558989 RINT1Q6NUQ1 792 aa10.65□□□□□ -0.71
SPG11-214ENST00000558989 ZNF598Q86UK7 904 aaKnown RBP10.65□□□□□ -0.71
SPG11-214ENST00000558989 COLGALT1Q8NBJ5 622 aa10.65□□□□□ -0.71
SPG11-214ENST00000558989 NOVA2Q9UNW9 492 aaKnown RBP10.65□□□□□ -0.71
SPG11-214ENST00000558989 PLAGL2Q9UPG8 496 aa10.65□□□□□ -0.71
SPG11-214ENST00000558989 RWDD3Q9Y3V2 267 aa10.65□□□□□ -0.71
SPG11-214ENST00000558989 PCDHB12Q9Y5F1 795 aa10.65□□□□□ -0.71
SPG11-214ENST00000558989 CITO14578 2027 aa10.65□□□□□ -0.71
SPG11-214ENST00000558989 HOXA2O43364 376 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms