RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ZBTB5O15062 677 aa12.15□□□□□ -0.47
LDLR-208ENST00000558518 SORBS3O60504 671 aa12.15□□□□□ -0.47
LDLR-208ENST00000558518 ITGA8P53708 1063 aa12.15□□□□□ -0.47
LDLR-208ENST00000558518 MPP2Q14168 576 aa12.15□□□□□ -0.47
LDLR-208ENST00000558518 C16orf86Q6ZW13 317 aa12.15□□□□□ -0.47
LDLR-208ENST00000558518 APBB1IPQ7Z5R6 666 aaPredicted RBP12.15□□□□□ -0.47
LDLR-208ENST00000558518 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.15□□□□□ -0.47
LDLR-208ENST00000558518 AGPAT1Q99943 283 aa12.15□□□□□ -0.47
LDLR-208ENST00000558518 SIX2Q9NPC8 291 aa12.15□□□□□ -0.47
LDLR-208ENST00000558518 CHST7Q9NS84 486 aa12.15□□□□□ -0.47
LDLR-208ENST00000558518 GRHL1Q9NZI5 618 aa12.15□□□□□ -0.47
LDLR-208ENST00000558518 SLC12A4Q9UP95 1085 aa12.15□□□□□ -0.47
LDLR-208ENST00000558518 BCL9O00512 1426 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 ASTN1O14525 1302 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 COL4A1P02462 1669 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 EML1O00423 815 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 TTLL1O95922 423 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 GBP1P32455 592 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 SLC12A3P55017 1021 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 SF3B3Q15393 1217 aaKnown RBP12.14□□□□□ -0.47
LDLR-208ENST00000558518 EDRF1Q3B7T1 1238 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 TLDC1Q6P9B6 456 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 PIGWQ7Z7B1 504 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 PASD1Q8IV76 773 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 CARD9Q9H257 536 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 K7ENM7 598 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 TMEM253P0C7T8 217 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 ATF2P15336 505 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 CHRNA3P32297 505 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 COILP38432 576 aaPredicted RBP12.14□□□□□ -0.47
LDLR-208ENST00000558518 ZNF543Q08ER8 600 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 ITIH4Q14624 930 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 ASPRV1Q53RT3 343 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 PHLDB3Q6NSJ2 640 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 EPM2AIP1Q7L775 607 aaPredicted RBP12.14□□□□□ -0.47
LDLR-208ENST00000558518 ARHGEF19Q8IW93 802 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 LINC00116Q8NCU8 138 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 ZSWIM2Q8NEG5 633 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 RIOX1Q9H6W3 641 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 PCDHA2Q9Y5H9 948 aa12.14□□□□□ -0.47
LDLR-208ENST00000558518 A0A0G2JND7 137 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 PI4K2BG5E9Z4 385 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 CA4P22748 312 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 SP4Q02446 784 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 SLMAPQ14BN4 828 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 MDH1BQ5I0G3 518 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 ISLR2Q6UXK2 745 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 SCYL3Q8IZE3 742 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 ZNF564Q8TBZ8 553 aaPredicted RBP12.13□□□□□ -0.47
LDLR-208ENST00000558518 ACSF2Q96CM8 615 aaPredicted RBP12.13□□□□□ -0.47
LDLR-208ENST00000558518 PGM2Q96G03 612 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 NAF1Q96HR8 494 aaKnown RBP12.13□□□□□ -0.47
LDLR-208ENST00000558518 TSC22D3Q99576 134 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 EIF2AK1Q9BQI3 630 aaKnown RBP12.13□□□□□ -0.47
LDLR-208ENST00000558518 RTFDC1Q9BY42 306 aaPredicted RBP12.13□□□□□ -0.47
LDLR-208ENST00000558518 MYLK2Q9H1R3 596 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 DLGAP2Q9P1A6 1054 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 STXBP5LQ9Y2K9 1186 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 AFF2P51816 1311 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 SLIT2O94813 1529 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 FAM187AA6NFU0 413 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 FAM86B1E9PN63 330 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 UBAP1LF5GYI3 381 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 FAM86B2P0C5J1 330 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 ATF7P17544 494 aaPredicted RBP12.13□□□□□ -0.47
LDLR-208ENST00000558518 CCND1P24385 295 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 CPA2P48052 419 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 DHX34Q14147 1143 aaKnown RBP12.13□□□□□ -0.47
LDLR-208ENST00000558518 DHX38Q92620 1227 aaKnown RBP12.13□□□□□ -0.47
LDLR-208ENST00000558518 P3H4Q92791 437 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 SLC5A5Q92911 643 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 STK33Q9BYT3 514 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 NPHS2Q9NP85 383 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 APEX2Q9UBZ4 518 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 ANAPC7Q9UJX3 599 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 ADAMTS7Q9UKP4 1686 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 SYNGAP1Q96PV0 1343 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 DDX60Q8IY21 1712 aaKnown RBP12.13□□□□□ -0.47
LDLR-208ENST00000558518 PDXKO00764 312 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 PAEPP09466 180 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 BCRP11274 1271 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 GPC5P78333 572 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 CETN1Q12798 172 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 SEMA3FQ13275 785 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 HHATQ5VTY9 493 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 LMBRD2Q68DH5 695 aaPredicted RBP12.13□□□□□ -0.47
LDLR-208ENST00000558518 SLC47A2Q86VL8 602 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 ZC3H18Q86VM9 953 aaKnown RBP12.13□□□□□ -0.47
LDLR-208ENST00000558518 RASGEF1CQ8N431 466 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 C3orf20Q8ND61 904 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 LRRC37BQ96QE4 947 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 ZSWIM1Q9BR11 485 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 CD209Q9NNX6 404 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 SERPINB13Q9UIV8 391 aa12.13□□□□□ -0.47
LDLR-208ENST00000558518 EXOC1LA0A1B0GW35 172 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 MEX3CQ5U5Q3 659 aaKnown RBP12.12□□□□□ -0.47
LDLR-208ENST00000558518 EMC10Q5UCC4 262 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 SLFN13Q68D06 897 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 PPP1R18Q6NYC8 613 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 TMEM154Q6P9G4 183 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms