RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 NDE1Q9NXR1 346 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 DLGAP2Q9P1A6 1054 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 CTNNAL1Q9UBT7 734 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 SSU72P8A0A1W2PR75 194 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 WNT7AO00755 349 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 DNAJC6O75061 913 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 GHRP10912 638 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 TAL1P17542 331 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 PGM1P36871 562 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 GARSP41250 739 aaKnown RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 ECE1P42892 770 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 CACNB3P54284 484 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 PEX3P56589 373 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 ERVK-9P63128 1117 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 CDK17Q00537 523 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 SATB1Q01826 763 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 MKRN3Q13064 507 aaKnown RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 TTLL12Q14166 644 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 COG2Q14746 738 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 MAP3K21Q5TCX8 1036 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 LMBRD2Q68DH5 695 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 SLC30A9Q6PML9 568 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 LVRNQ6Q4G3 990 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 DGKHQ86XP1 1220 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 CRLF3Q8IUI8 442 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 C3orf20Q8ND61 904 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 ATP2A3Q93084 1043 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 FAM84BQ96KN1 310 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 NACC1Q96RE7 527 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 AMNQ9BXJ7 453 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 OSGEPQ9NPF4 335 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 PHTF1Q9UMS5 762 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 MRPL11Q9Y3B7 192 aaKnown RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 L3MBTL1Q9Y468 752 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 HNRNPDLO14979 420 aaKnown RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 TJP3O95049 919 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 GNAT1P11488 350 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 MXI1P50539 228 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 USP11P51784 963 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 POLGP54098 1239 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 IFI35P80217 286 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 CAV1Q03135 178 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 THOC5Q13769 683 aaKnown RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 PREPLQ4J6C6 727 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 PPP1R18Q6NYC8 613 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 WDR59Q6PJI9 974 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 TMED8Q6PL24 325 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 KAT2BQ92831 832 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 RUSC1Q9BVN2 902 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 APOL6Q9BWW8 343 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 TSPYL2Q9H2G4 693 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 TMEM94Q12767 1356 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 MIF4GDA9UHW6 222 aaKnown RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 PIK3R2O00459 728 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 SGPL1O95470 568 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 TNNC2P02585 160 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 ATP4AP20648 1035 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 FLT3P36888 993 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 KCNJ1P48048 391 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 ATXN3P54252 364 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 MRPS9P82933 396 aaKnown RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 AMPD2Q01433 879 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 DEUP1Q05D60 604 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 CUL3Q13618 768 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 C1orf228Q6PIY5 440 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 AGGF1Q8N302 714 aaeCLIP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 ACTRT1Q8TDG2 376 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 SLC26A7Q8TE54 656 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 SYN2Q92777 582 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 DUSP9Q99956 384 aaKnown RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 C11orf70Q9BRQ4 267 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 CCSER1Q9C0I3 900 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 TMEM117Q9H0C3 514 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 DHX36Q9H2U1 1008 aaKnown RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 ABCF3Q9NUQ8 709 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 RHBDL2Q9NX52 303 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 PNMA3Q9UL41 463 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 LRRIQ4A6NIV6 560 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 MEI4A8MW99 385 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 ASAP2O43150 1006 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 ARL4CP56559 192 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 OSTNP61366 133 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 TMC3Q7Z5M5 1100 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 CDAN1Q8IWY9 1227 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 ATG4AQ8WYN0 398 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 KLF6Q99612 283 aaPredicted RBP5.3□□□□□ -1.56
SYNE2-223ENST00000557005 ERP44Q9BS26 406 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 RGL1Q9NZL6 768 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 STOML1Q9UBI4 398 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 APEX2Q9UBZ4 518 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.3□□□□□ -1.56
SYNE2-223ENST00000557005 RICTORQ6R327 1708 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 PI4K2BG5E9Z4 385 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 ATP9AO75110 1047 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 CASP2P42575 452 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 EPHB1P54762 984 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 CASP7P55210 303 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 RCN1Q15293 331 aa5.3□□□□□ -1.56
SYNE2-223ENST00000557005 BRDTQ58F21 947 aaPredicted RBP5.3□□□□□ -1.56
SYNE2-223ENST00000557005 DAB2IPQ5VWQ8 1189 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms