RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 RRP1BQ14684 758 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 SNRNP35Q16560 246 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 SPOPLQ6IQ16 392 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 PRUNE1Q86TP1 453 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 NT5DC3Q86UY8 548 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 CCDC13Q8IYE1 715 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 PWWP2AQ96N64 755 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 NSRP1Q9H0G5 558 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 ERVK-5Q9HDB9 667 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 STK32BQ9NY57 414 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 STK24Q9Y6E0 443 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 MEFVO15553 781 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 RWDD2BP57060 319 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 CYFIP2Q96F07 1278 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 CCDC77Q9BR77 488 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 VCPKMTQ9H867 229 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 ATF5Q9Y2D1 282 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 SUGT1Q9Y2Z0 365 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 BCL9LQ86UU0 1499 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 PIK3R2O00459 728 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 ASNSP08243 561 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 ZNF844Q08AG5 666 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 KYNUQ16719 465 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 RHOT2Q8IXI1 618 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 ANKRD35Q8N283 1001 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 TAS1R2Q8TE23 839 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 ALG3Q92685 438 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 TATDN2Q93075 761 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 HAUS2Q9NVX0 235 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 TOGARAM1Q9Y4F4 1720 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 STRCP1A6NGW2 1772 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 TBX3O15119 743 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 HOXA10P31260 410 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 IFI35P80217 286 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 BRDTQ58F21 947 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 ICE2Q659A1 982 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 MCTP2Q6DN12 878 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 CCDC197Q8NCU1 140 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 ERP44Q9BS26 406 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 TMEM117Q9H0C3 514 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 TUFT1Q9NNX1 390 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 WRAP73Q9P2S5 460 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 ANAPC5Q9UJX4 755 aa13.03□□□□□ -0.32
CCDC88C-211ENST00000556726 MYH15Q9Y2K3 1946 aa13.02□□□□□ -0.32
CCDC88C-211ENST00000556726 PIAS1O75925 651 aa13.02□□□□□ -0.32
CCDC88C-211ENST00000556726 ERFP50548 548 aa13.02□□□□□ -0.32
CCDC88C-211ENST00000556726 TFAMQ00059 246 aaKnown RBP13.02□□□□□ -0.32
CCDC88C-211ENST00000556726 TRPC3Q13507 836 aa13.02□□□□□ -0.32
CCDC88C-211ENST00000556726 ASTE1Q2TB18 679 aaPredicted RBP13.02□□□□□ -0.32
CCDC88C-211ENST00000556726 SNRNP48Q6IEG0 339 aaKnown RBP13.02□□□□□ -0.32
CCDC88C-211ENST00000556726 SUPT20HQ8NEM7 779 aa13.02□□□□□ -0.32
CCDC88C-211ENST00000556726 AKT1S1Q96B36 256 aa13.02□□□□□ -0.32
CCDC88C-211ENST00000556726 POLR3CQ9BUI4 534 aaPredicted RBP13.02□□□□□ -0.32
CCDC88C-211ENST00000556726 GDF3Q9NR23 364 aa13.02□□□□□ -0.32
CCDC88C-211ENST00000556726 RNF146Q9NTX7 359 aa13.02□□□□□ -0.32
CCDC88C-211ENST00000556726 SPAG7O75391 227 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 CNGA1P29973 690 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 HOXD13P35453 343 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 CLK2P49760 499 aaKnown RBP13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 SLC27A3Q5K4L6 730 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 LIN9Q5TKA1 542 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 SAMD7Q7Z3H4 446 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 RAPGEF5Q92565 580 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 MXRA8Q9BRK3 442 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 CD248Q9HCU0 757 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 TRPC6Q9Y210 931 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 TMEM253P0C7T8 217 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 PYGMP11217 842 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 SCP2P22307 547 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 HMGCS2P54868 508 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 KRT17Q04695 432 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 C1orf186Q6ZWK4 172 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 TAOK1Q7L7X3 1001 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 VSIG1Q86XK7 387 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 THNSL1Q8IYQ7 743 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 PRPF38AQ8NAV1 312 aaKnown RBP13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 CAVIN3Q969G5 261 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 SLITRK6Q9H5Y7 841 aa13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 SUCLA2Q9P2R7 463 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-211ENST00000556726 ADAMTS7Q9UKP4 1686 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 TCRBV7S2A1N4TA0A589 114 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 SLC16A3O15427 465 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 NAA25Q14CX7 972 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 MCF2L2Q86YR7 1114 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 TTLL6Q8N841 843 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 TRIM7Q9C029 511 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 LRRD1A4D1F6 860 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 A6NNZ2 444 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 TUBB8Q3ZCM7 444 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 Q4G0T1 1027 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 KRT39Q6A163 491 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 MMS22LQ6ZRQ5 1243 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 CERKQ8TCT0 537 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 ARHGEF2Q92974 986 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 ATG4CQ96DT6 458 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 TMBIM4Q9HC24 238 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 ADAM22Q9P0K1 906 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 CEP83Q9Y592 693 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 DOT1LQ8TEK3 1739 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 ITGB4P16144 1822 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms