RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 MBLAC2Q68D91 279 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 TCTN3Q6NUS6 607 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 TDHQ8IZJ6 230 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 ZBTB38Q8NAP3 1195 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-206ENST00000550611 EDAQ92838 391 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 YIPF4Q9BSR8 244 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 PNNQ9H307 717 aaKnown RBP4.58□□□□□ -1.68
LIMA1-206ENST00000550611 CHPF2Q9P2E5 772 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 WDFY4Q6ZS81 3184 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 KDM3BQ7LBC6 1761 aa4.58□□□□□ -1.68
LIMA1-206ENST00000550611 XIRP2A4UGR9 3374 aa4.57□□□□□ -1.68
LIMA1-206ENST00000550611 XDHP47989 1333 aa4.57□□□□□ -1.68
LIMA1-206ENST00000550611 FOXS1O43638 330 aa4.57□□□□□ -1.68
LIMA1-206ENST00000550611 PCCAP05165 728 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-206ENST00000550611 PTH1RQ03431 593 aa4.57□□□□□ -1.68
LIMA1-206ENST00000550611 STRIP1Q5VSL9 837 aa4.57□□□□□ -1.68
LIMA1-206ENST00000550611 HEATR6Q6AI08 1181 aaKnown RBP4.57□□□□□ -1.68
LIMA1-206ENST00000550611 DIS3LQ8TF46 1054 aaKnown RBP4.57□□□□□ -1.68
LIMA1-206ENST00000550611 PAWRQ96IZ0 340 aaKnown RBP4.57□□□□□ -1.68
LIMA1-206ENST00000550611 TMEM209Q96SK2 561 aa4.57□□□□□ -1.68
LIMA1-206ENST00000550611 ADOQ96SZ5 270 aa4.57□□□□□ -1.68
LIMA1-206ENST00000550611 MXD3Q9BW11 206 aa4.57□□□□□ -1.68
LIMA1-206ENST00000550611 HYPKQ9NX55 129 aa4.57□□□□□ -1.68
LIMA1-206ENST00000550611 DBF4Q9UBU7 674 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-206ENST00000550611 DNAH12Q6ZR08 3092 aa4.57□□□□□ -1.68
LIMA1-206ENST00000550611 ZSWIM8A7E2V4 1837 aa4.57□□□□□ -1.68
LIMA1-206ENST00000550611 LRRC37AA6NMS7 1700 aa4.57□□□□□ -1.68
LIMA1-206ENST00000550611 PIEZO1Q92508 2521 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 CACNA1GO43497 2377 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 ANKRD36CQ5JPF3 1778 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 A0A087X1B8 175 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 MANSC4A6NHS7 340 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-206ENST00000550611 PDE8AO60658 829 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 PPFIA2O75334 1257 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 TFRCP02786 760 aaKnown RBP4.56□□□□□ -1.68
LIMA1-206ENST00000550611 GJB1P08034 283 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 ZNF853P0CG23 659 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 PLS3P13797 630 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 HSP90B1P14625 803 aaKnown RBP4.56□□□□□ -1.68
LIMA1-206ENST00000550611 KRTAP15-1Q3LI76 137 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 ARMC9Q7Z3E5 817 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 KIAA0825Q8IV33 1275 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 TEX2Q8IWB9 1127 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 Q8N1Y9 231 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 CCDC191Q8NCU4 936 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 U2AF1L4Q8WU68 220 aaKnown RBP4.56□□□□□ -1.68
LIMA1-206ENST00000550611 PPM1EQ8WY54 764 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 COPS5Q92905 334 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 TOE1Q96GM8 510 aaKnown RBP4.56□□□□□ -1.68
LIMA1-206ENST00000550611 WNK4Q96J92 1243 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 ZSWIM3Q96MP5 696 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 FERD3LQ96RJ6 166 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 LRFN3Q9BTN0 628 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 EPHX3Q9H6B9 360 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 CROTQ9UKG9 612 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 ZDHHC9Q9Y397 364 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 SLC4A7Q9Y6M7 1214 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 PCSK5Q92824 1860 aa4.56□□□□□ -1.68
LIMA1-206ENST00000550611 REV3LO60673 3130 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 MED23Q9ULK4 1368 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 MYO3BQ8WXR4 1341 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 MAPK8IP3Q9UPT6 1336 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 USP34Q70CQ2 3546 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 SGPL1O95470 568 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 EPHX1P07099 455 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 ZBTB48P10074 688 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-206ENST00000550611 NF2P35240 595 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 MRE11P49959 708 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 CCT4P50991 539 aaKnown RBP4.55□□□□□ -1.68
LIMA1-206ENST00000550611 LMOD3Q0VAK6 560 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 LSM12Q3MHD2 195 aaKnown RBP4.55□□□□□ -1.68
LIMA1-206ENST00000550611 CCDC152Q4G0S7 254 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 USP39Q53GS9 565 aaKnown RBP4.55□□□□□ -1.68
LIMA1-206ENST00000550611 FAM109BQ6ICB4 259 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-206ENST00000550611 ANKRD18AQ8IVF6 992 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 TTLL11Q8NHH1 800 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 GNRHR2Q96P88 292 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 SPON2Q9BUD6 331 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 COA1Q9GZY4 146 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 CSRNP2Q9H175 543 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 DEFB129Q9H1M3 183 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 TTYH1Q9H313 450 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-206ENST00000550611 PHAXQ9H814 394 aaKnown RBP4.55□□□□□ -1.68
LIMA1-206ENST00000550611 DTLQ9NZJ0 730 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 CLEC1BQ9P126 229 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 KIAA1522Q9P206 1035 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-206ENST00000550611 X6R8D5 127 aa4.55□□□□□ -1.68
LIMA1-206ENST00000550611 SCN9AQ15858 1988 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 MUC6Q6W4X9 2439 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 TAF1P21675 1872 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 CFAP54Q96N23 3096 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 IGKV5-2P06315 115 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 COL6A1P12109 1028 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 COMTP21964 271 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 GNPTABQ3T906 1256 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 TTLL5Q6EMB2 1281 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 TRMT10BQ6PF06 316 aaKnown RBP4.54□□□□□ -1.68
LIMA1-206ENST00000550611 TEPPQ6URK8 271 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 RUFY4Q6ZNE9 571 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 C15orf52Q6ZUT6 534 aaKnown RBP4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms