RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 UBA7P41226 1012 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 USP11P51784 963 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 LPIN1Q14693 890 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 CAMK4Q16566 473 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 STX1AQ16623 288 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 SLC35G1Q2M3R5 365 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 CELF3Q5SZQ8 465 aaKnown RBP7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 UTP14CQ5TAP6 766 aaKnown RBP7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 PLPP4Q5VZY2 271 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 PPP4R3AQ6IN85 833 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 MOXD1Q6UVY6 613 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 RUFY4Q6ZNE9 571 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 RBM43Q6ZSC3 357 aaKnown RBP7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 UBALD2Q8IYN6 164 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 CMTR2Q8IYT2 770 aaKnown RBP7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 IQUBQ8NA54 791 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 ENGASEQ8NFI3 743 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 RASGRP4Q8TDF6 673 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 TBCKQ8TEA7 893 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 LMBR1Q8WVP7 490 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 LINC01599Q8WXQ3 324 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 P2RX5Q93086 422 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 CCDC47Q96A33 483 aaKnown RBP7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 IWS1Q96ST2 819 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 MAF1Q9H063 256 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 RNPEPQ9H4A4 650 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 TUT1Q9H6E5 874 aaKnown RBP7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 PXMP2Q9NR77 195 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 MAP3K20Q9NYL2 800 aaKnown RBP7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 HPSEQ9Y251 543 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 NR2E1Q9Y466 385 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 PLXNA3P51805 1871 aa7.91□□□□□ -1.14
DEPDC4-208ENST00000549341 CEP295Q9C0D2 2601 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 VWA3AA6NCI4 1184 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 PIK3CDO00329 1044 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 SLC26A4O43511 780 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 DGKIO75912 1065 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 CHRNA1P02708 482 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 GNAT1P11488 350 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 HOXC8P31273 242 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 CD52P31358 61 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 ZNF76P36508 570 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 TYRO3Q06418 890 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 SNW1Q13573 536 aaKnown RBP7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 ANGPT1Q15389 498 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 CALCRLQ16602 461 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 DUSP6Q16828 381 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 EARS2Q5JPH6 523 aaKnown RBP7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 CWF19L1Q69YN2 538 aaKnown RBP7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 SHC4Q6S5L8 630 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 KRBA2Q6ZNG9 492 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 CKAP2LQ8IYA6 745 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 SLFN12Q8IYM2 578 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 THNSL1Q8IYQ7 743 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 IL31RAQ8NI17 732 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 FAM200AQ8TCP9 573 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 ZNF689Q96CS4 500 aaPredicted RBP7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 CALML4Q96GE6 196 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 CLIC6Q96NY7 704 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 ANO3Q9BYT9 981 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 GTPBP4Q9BZE4 634 aaKnown RBP7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 CSRNP2Q9H175 543 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 CUEDC2Q9H467 287 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 GOLPH3LQ9H4A5 285 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 MAGEF1Q9HAY2 307 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 ZNF215Q9UL58 517 aaPredicted RBP7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 R4GN57 208 aa7.9□□□□□ -1.14
DEPDC4-208ENST00000549341 MAP1BP46821 2468 aaKnown RBP7.9□□□□□ -1.15
DEPDC4-208ENST00000549341 SMTNL1A8MU46 457 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 BECN2A8MW95 431 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 ENPP3O14638 875 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 POLR2DO15514 142 aaKnown RBP7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 LMNAP02545 664 aaKnown RBP7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 MYL1P05976 194 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 WEE2P0C1S8 567 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 RFX1P22670 979 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 HOXA13P31271 388 aaPredicted RBP7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 CA8P35219 290 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 CLK2P49760 499 aaKnown RBP7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 AMPD3Q01432 767 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 SP2Q02086 613 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 CCDC173Q0VFZ6 552 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 SEMA3FQ13275 785 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 PUM1Q14671 1186 aaKnown RBP eCLIP7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 UBE2SQ16763 222 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 NAALADL2Q58DX5 795 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 RRAGBQ5VZM2 374 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 ANKRD54Q6NXT1 300 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 SYCE2Q6PIF2 218 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 TSHZ1Q6ZSZ6 1077 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 RSPH3Q86UC2 560 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 NPAS4Q8IUM7 802 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 TRIML1Q8N9V2 468 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 TDRD5Q8NAT2 981 aaKnown RBP7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 CYP2W1Q8TAV3 490 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 ATP8B4Q8TF62 1192 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 RIN2Q8WYP3 895 aaPredicted RBP7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 SMARCE1Q969G3 411 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 CDK5RAP3Q96JB5 506 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 CDCA3Q99618 268 aaPredicted RBP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms