RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 ATF7IP2Q5U623 682 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 RASIP1Q5U651 963 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 TWF2Q6IBS0 349 aaKnown RBP13.36□□□□□ -0.27
DDX55-210ENST00000543016 SLC27A1Q6PCB7 646 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 TAS1R3Q7RTX0 852 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 GOLGA5Q8TBA6 731 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 SLC9A7Q96T83 725 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 ACO2Q99798 780 aaKnown RBP13.36□□□□□ -0.27
DDX55-210ENST00000543016 OSBPL7Q9BZF2 842 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 TBC1D7Q9P0N9 293 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 TET1Q8NFU7 2136 aa13.36□□□□□ -0.27
DDX55-210ENST00000543016 C9IYK1 514 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 HNRNPDLO14979 420 aaKnown RBP13.35□□□□□ -0.27
DDX55-210ENST00000543016 KIAA0391O15091 583 aaKnown RBP13.35□□□□□ -0.27
DDX55-210ENST00000543016 HOXA2O43364 376 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 FGFR4P22455 802 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 LIG4P49917 911 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 STK4Q13043 487 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 STIM1Q13586 685 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 CCDC183Q5T5S1 534 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 PRPF38BQ5VTL8 546 aaKnown RBP13.35□□□□□ -0.27
DDX55-210ENST00000543016 OTOP2Q7RTS6 562 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 MYOCDQ8IZQ8 938 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 SYCP3Q8IZU3 236 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 GUF1Q8N442 669 aaKnown RBP13.35□□□□□ -0.27
DDX55-210ENST00000543016 PGBD4Q96DM1 585 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 BICD1Q96G01 975 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 PTPRHQ9HD43 1115 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 SLC39A2Q9NP94 309 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 UBN1Q9NPG3 1134 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 STYXL1Q9Y6J8 313 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 SLC4A7Q9Y6M7 1214 aa13.35□□□□□ -0.27
DDX55-210ENST00000543016 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.34□□□□□ -0.27
DDX55-210ENST00000543016 CLDN3O15551 220 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 B4GALT5O43286 388 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 LETM1O95202 739 aaPredicted RBP13.34□□□□□ -0.27
DDX55-210ENST00000543016 MYBP10242 640 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 MCF2P10911 925 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 PROZP22891 400 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 WDR5P61964 334 aaKnown RBP13.34□□□□□ -0.27
DDX55-210ENST00000543016 POU5F1Q01860 360 aaKnown RBP13.34□□□□□ -0.27
DDX55-210ENST00000543016 CAMK4Q16566 473 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 KNOP1Q1ED39 458 aaKnown RBP13.34□□□□□ -0.27
DDX55-210ENST00000543016 ZC2HC1CQ53FD0 456 aaPredicted RBP13.34□□□□□ -0.27
DDX55-210ENST00000543016 MPZL3Q6UWV2 235 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 RBM43Q6ZSC3 357 aaKnown RBP13.34□□□□□ -0.27
DDX55-210ENST00000543016 HS2ST1Q7LGA3 356 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 MRPL10Q7Z7H8 261 aaKnown RBP13.34□□□□□ -0.27
DDX55-210ENST00000543016 RTN4RL1Q86UN2 441 aaPredicted RBP13.34□□□□□ -0.27
DDX55-210ENST00000543016 NPAS4Q8IUM7 802 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 TMEM174Q8WUU8 243 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 SCFD1Q8WVM8 642 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 TOP1MTQ969P6 601 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 RNPC3Q96LT9 517 aaKnown RBP13.34□□□□□ -0.27
DDX55-210ENST00000543016 TCHPQ9BT92 498 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 TARS2Q9BW92 718 aaKnown RBP13.34□□□□□ -0.27
DDX55-210ENST00000543016 TRIM6Q9C030 488 aaPredicted RBP13.34□□□□□ -0.27
DDX55-210ENST00000543016 GBP3Q9H0R5 595 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 PDZD7Q9H5P4 517 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 FAM105AQ9NUU6 356 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 TMEM161AQ9NX61 479 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 PCDHB7Q9Y5E2 793 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 MKI67P46013 3256 aaKnown RBP13.34□□□□□ -0.27
DDX55-210ENST00000543016 SIP14410 1827 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 SCN5AQ14524 2016 aa13.34□□□□□ -0.27
DDX55-210ENST00000543016 ZMYM2Q9UBW7 1377 aa13.33□□□□□ -0.27
DDX55-210ENST00000543016 DNAH12Q6ZR08 3092 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 ZBBXA8MT70 800 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 MGEA5O60502 916 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 PRPF6O94906 941 aaKnown RBP13.33□□□□□ -0.28
DDX55-210ENST00000543016 GARTP22102 1010 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 CASP5P51878 434 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 MCL1Q07820 350 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 MORC3Q14149 939 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 MYBPC2Q14324 1141 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 SHHQ15465 462 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 ZNF568Q3ZCX4 644 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 CT47A1Q5JQC4 288 aaPredicted RBP13.33□□□□□ -0.28
DDX55-210ENST00000543016 UBXN11Q5T124 520 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 FOXR2Q6PJQ5 311 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 ECHDC2Q86YB7 292 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 TDHQ8IZJ6 230 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 KIAA0895Q8NCT3 520 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 LINC01599Q8WXQ3 324 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 HPS3Q969F9 1004 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 CPB2Q96IY4 423 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 PRO3102Q9H379 93 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 MAN1B1Q9UKM7 699 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 LRFN2Q9ULH4 789 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 PCDHB2Q9Y5E7 798 aa13.33□□□□□ -0.28
DDX55-210ENST00000543016 A0A0B4J269 797 aa13.32□□□□□ -0.28
DDX55-210ENST00000543016 PDXKO00764 312 aa13.32□□□□□ -0.28
DDX55-210ENST00000543016 LDHAP00338 332 aaKnown RBP13.32□□□□□ -0.28
DDX55-210ENST00000543016 NOLC1Q14978 699 aaKnown RBP eCLIP13.32□□□□□ -0.28
DDX55-210ENST00000543016 TCTN1Q2MV58 587 aa13.32□□□□□ -0.28
DDX55-210ENST00000543016 ZNF598Q86UK7 904 aaKnown RBP13.32□□□□□ -0.28
DDX55-210ENST00000543016 C12orf56Q8IXR9 622 aa13.32□□□□□ -0.28
DDX55-210ENST00000543016 CRIPAKQ8N1N5 446 aa13.32□□□□□ -0.28
DDX55-210ENST00000543016 MLKLQ8NB16 471 aa13.32□□□□□ -0.28
DDX55-210ENST00000543016 DHTKD1Q96HY7 919 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms