RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 TTC7AQ9ULT0 858 aaPredicted RBP7.17□□□□□ -1.26
USP28-206ENST00000538224 HPCAL4Q9UM19 191 aa7.17□□□□□ -1.26
USP28-206ENST00000538224 RIPK3Q9Y572 518 aa7.17□□□□□ -1.26
USP28-206ENST00000538224 SYNGAP1Q96PV0 1343 aa7.17□□□□□ -1.26
USP28-206ENST00000538224 GOLGA6BA6NDN3 693 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 ZNF233A6NK53 670 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 A6NNZ2 444 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 LRRIQ3A6PVS8 624 aaPredicted RBP7.16□□□□□ -1.26
USP28-206ENST00000538224 POLR3GO15318 223 aaPredicted RBP7.16□□□□□ -1.26
USP28-206ENST00000538224 EXTL3O43909 919 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 CEP104O60308 925 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 HSF2BPO75031 334 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 RTN2O75298 545 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 MTA2O94776 668 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 HEXIM1O94992 359 aaKnown RBP7.16□□□□□ -1.26
USP28-206ENST00000538224 ATG7O95352 703 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 GGPS1O95749 300 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 SLC25A27O95847 323 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 PIGRP01833 764 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 TGFB3P10600 412 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 CXCR5P32302 372 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 GBP1P32455 592 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 CYP2C19P33261 490 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 GCLMP48507 274 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 LIG4P49917 911 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 ALDH5A1P51649 535 aaPredicted RBP7.16□□□□□ -1.26
USP28-206ENST00000538224 AP3M2P53677 418 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 BPIFB4P59827 614 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 GPC5P78333 572 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 GCNT1Q02742 428 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 CYP24A1Q07973 514 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 DGKZQ13574 1117 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 NEDD9Q14511 834 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 EMC2Q15006 297 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 TUBB8Q3ZCM7 444 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 PHLDB3Q6NSJ2 640 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 SWSAP1Q6NVH7 229 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 GJB7Q6PEY0 223 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 LBX2Q6XYB7 198 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 NT5DC3Q86UY8 548 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 ZNF677Q86XU0 584 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 GPIHBP1Q8IV16 184 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 SULF1Q8IWU6 871 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 FAM71AQ8IYT1 594 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 RASGEF1CQ8N431 466 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 MREGQ8N565 214 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 UBL4BQ8N7F7 174 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 RDH13Q8NBN7 331 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 CCDC26Q8TAB7 109 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 PARD3BQ8TEW8 1205 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 SLC7A3Q8WY07 619 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 SHC3Q92529 594 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 DCPSQ96C86 337 aaKnown RBP7.16□□□□□ -1.26
USP28-206ENST00000538224 HES6Q96HZ4 224 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 WNK4Q96J92 1243 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 RUNDC3BQ96NL0 473 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 PSMB7Q99436 277 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 JPH2Q9BR39 696 aaPredicted RBP7.16□□□□□ -1.26
USP28-206ENST00000538224 LRRC1Q9BTT6 524 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 PLVAPQ9BX97 442 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 GPR88Q9GZN0 384 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 TMEM117Q9H0C3 514 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 POLR3FQ9H1D9 316 aaPredicted RBP7.16□□□□□ -1.26
USP28-206ENST00000538224 ISCUQ9H1K1 167 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 POLD4Q9HCU8 107 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 ZNF302Q9NR11 478 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 PDLIM7Q9NR12 457 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 GDF3Q9NR23 364 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 C1orf112Q9NSG2 853 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 NRBP2Q9NSY0 501 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 SEPT11Q9NVA2 429 aaKnown RBP7.16□□□□□ -1.26
USP28-206ENST00000538224 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.16□□□□□ -1.26
USP28-206ENST00000538224 VPS18Q9P253 973 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 TMEM59LQ9UK28 342 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 STXBP5LQ9Y2K9 1186 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 NOC2LQ9Y3T9 749 aaKnown RBP7.16□□□□□ -1.26
USP28-206ENST00000538224 MAFBQ9Y5Q3 323 aaPredicted RBP7.16□□□□□ -1.26
USP28-206ENST00000538224 SNCAIPQ9Y6H5 919 aa7.16□□□□□ -1.26
USP28-206ENST00000538224 PLXNB2O15031 1838 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 SCN4AP35499 1836 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 PLXNA1Q9UIW2 1896 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 H3BQF6 201 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 FOXN3O00409 490 aaPredicted RBP7.15□□□□□ -1.26
USP28-206ENST00000538224 CXCL11O14625 94 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 ZNF862O60290 1169 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 LRRN2O75325 713 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 ADRB2P07550 413 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 POTEJP0CG39 1038 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 MYBL1P10243 752 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 EDNRBP24530 442 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 MATR3P43243 847 aaKnown RBP eCLIP7.15□□□□□ -1.26
USP28-206ENST00000538224 EFNA5P52803 228 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 IRX3P78415 501 aaPredicted RBP7.15□□□□□ -1.26
USP28-206ENST00000538224 CDR2Q01850 454 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 PPATQ06203 517 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 PPP3CAQ08209 521 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 PPFIA1Q13136 1202 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 MTMR3Q13615 1198 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 VGLL4Q14135 290 aa7.15□□□□□ -1.26
USP28-206ENST00000538224 PSMD6Q15008 389 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms