RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 KRTAP1-5Q9BYS1 174 aa3.8□□□□□ -1.8
SKA3-207ENST00000536239 SLC29A3Q9BZD2 475 aa3.8□□□□□ -1.8
SKA3-207ENST00000536239 SALL3Q9BXA9 1300 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 CCDC85CA6NKD9 419 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 M0R2C6 588 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 PRPF6O94906 941 aaKnown RBP3.79□□□□□ -1.8
SKA3-207ENST00000536239 SPDEFO95238 335 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 HSP90B1P14625 803 aaKnown RBP3.79□□□□□ -1.8
SKA3-207ENST00000536239 PTX3P26022 381 aaPredicted RBP3.79□□□□□ -1.8
SKA3-207ENST00000536239 ABCG1P45844 678 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 GZMKP49863 264 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 CD69Q07108 199 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 ADCY1Q08828 1119 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 DDB1Q16531 1140 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 PDCD4Q53EL6 469 aaKnown RBP3.79□□□□□ -1.8
SKA3-207ENST00000536239 KRTAP5-11Q6L8G4 156 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 TIGD7Q6NT04 549 aaPredicted RBP3.79□□□□□ -1.8
SKA3-207ENST00000536239 DRICH1Q6PGQ1 229 aaPredicted RBP3.79□□□□□ -1.8
SKA3-207ENST00000536239 PHYKPLQ8IUZ5 450 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 KIAA1958Q8N8K9 716 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 HIST1H2AHQ96KK5 128 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 HIST1H2AJQ99878 128 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 SPON1Q9HCB6 807 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 SEMA4GQ9NTN9 838 aa3.79□□□□□ -1.8
SKA3-207ENST00000536239 MAST3O60307 1309 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 IKBKBO14920 756 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 SPATA31D3P0C874 917 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 ZNF174Q15697 407 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 KIAA1841Q6NSI8 718 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 BTNL9Q6UXG8 535 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 UNQ6494/PRO21346Q6UXR6 183 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 SPATA31D4Q6ZUB0 917 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 C1QL2Q7Z5L3 287 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 CKAP2LQ8IYA6 745 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 SLC44A3Q8N4M1 653 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 ZNF366Q8N895 744 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 Q8N9P0 234 aaPredicted RBP3.78□□□□□ -1.8
SKA3-207ENST00000536239 CHST14Q8NCH0 376 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 MYL10Q9BUA6 226 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 C1QTNF7Q9BXJ2 289 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 KIAA1586Q9HCI6 787 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 INTS7Q9NVH2 962 aaKnown RBP3.78□□□□□ -1.8
SKA3-207ENST00000536239 RNF181Q9P0P0 153 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 USP36Q9P275 1121 aaKnown RBP3.78□□□□□ -1.8
SKA3-207ENST00000536239 MAP3K2Q9Y2U5 619 aa3.78□□□□□ -1.8
SKA3-207ENST00000536239 PTPDC1A2A3K4 754 aa3.77□□□□□ -1.81
SKA3-207ENST00000536239 H7C1D1 291 aa3.77□□□□□ -1.81
SKA3-207ENST00000536239 C1QL1O75973 258 aa3.77□□□□□ -1.81
SKA3-207ENST00000536239 APOL3O95236 402 aa3.77□□□□□ -1.81
SKA3-207ENST00000536239 ITGAMP11215 1152 aa3.77□□□□□ -1.81
SKA3-207ENST00000536239 RARRES1P49788 294 aa3.77□□□□□ -1.81
SKA3-207ENST00000536239 ZNF81P51508 661 aa3.77□□□□□ -1.81
SKA3-207ENST00000536239 SIM1P81133 766 aaPredicted RBP3.77□□□□□ -1.81
SKA3-207ENST00000536239 DUSP2Q05923 314 aa3.77□□□□□ -1.81
SKA3-207ENST00000536239 RESTQ13127 1097 aa3.77□□□□□ -1.81
SKA3-207ENST00000536239 ZNF169Q14929 603 aaPredicted RBP3.77□□□□□ -1.81
SKA3-207ENST00000536239 TAS1R1Q7RTX1 841 aa3.77□□□□□ -1.81
SKA3-207ENST00000536239 DDX53Q86TM3 631 aaKnown RBP3.77□□□□□ -1.81
SKA3-207ENST00000536239 ARHGEF25Q86VW2 580 aa3.77□□□□□ -1.81
SKA3-207ENST00000536239 C7orf31Q8N865 590 aa3.77□□□□□ -1.81
SKA3-207ENST00000536239 OR10H5Q8NGA6 315 aa3.77□□□□□ -1.81
SKA3-207ENST00000536239 MRPL4Q9BYD3 311 aaKnown RBP3.77□□□□□ -1.81
SKA3-207ENST00000536239 TRIM39Q9HCM9 518 aa3.77□□□□□ -1.81
SKA3-207ENST00000536239 LRRC3CA6NJW4 275 aa3.76□□□□□ -1.81
SKA3-207ENST00000536239 MARCH11A6NNE9 402 aa3.76□□□□□ -1.81
SKA3-207ENST00000536239 GLRX3O76003 335 aaKnown RBP3.76□□□□□ -1.81
SKA3-207ENST00000536239 STK10O94804 968 aaKnown RBP3.76□□□□□ -1.81
SKA3-207ENST00000536239 LY86O95711 162 aa3.76□□□□□ -1.81
SKA3-207ENST00000536239 RBP3P10745 1247 aa3.76□□□□□ -1.81
SKA3-207ENST00000536239 TCF3P15923 654 aa3.76□□□□□ -1.81
SKA3-207ENST00000536239 ESRP1Q6NXG1 681 aaKnown RBP3.76□□□□□ -1.81
SKA3-207ENST00000536239 ZNF778Q96MU6 729 aa3.76□□□□□ -1.81
SKA3-207ENST00000536239 SAMD15Q9P1V8 674 aa3.76□□□□□ -1.81
SKA3-207ENST00000536239 FPGT-TNNI3KV9GXZ4 949 aa3.76□□□□□ -1.81
SKA3-207ENST00000536239 MYPNQ86TC9 1320 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 CCDC163A0A0D9SF12 145 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 CGB1A6NKQ9 187 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 CENPBP07199 599 aaPredicted RBP3.75□□□□□ -1.81
SKA3-207ENST00000536239 SLC9A1P19634 815 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 MGAT1P26572 445 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 CACNA2D1P54289 1103 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 MXRA7P84157 204 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 APBA1Q02410 837 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 SCAPQ12770 1279 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 FAM102AQ5T9C2 384 aaPredicted RBP3.75□□□□□ -1.81
SKA3-207ENST00000536239 PIK3R6Q5UE93 754 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 METRNLQ641Q3 311 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 ARMC6Q6NXE6 501 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 EFCAB12Q6NXP0 572 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 ZCCHC8Q6NZY4 707 aaKnown RBP3.75□□□□□ -1.81
SKA3-207ENST00000536239 SH2D3CQ8N5H7 860 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 MSL3Q8N5Y2 521 aaKnown RBP3.75□□□□□ -1.81
SKA3-207ENST00000536239 ELF4Q99607 663 aaPredicted RBP3.75□□□□□ -1.81
SKA3-207ENST00000536239 BRIP1Q9BX63 1249 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 POFUT1Q9H488 388 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 KMT5AQ9NQR1 393 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 SLTMQ9NWH9 1034 aaKnown RBP eCLIP3.75□□□□□ -1.81
SKA3-207ENST00000536239 PODXL2Q9NZ53 605 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 POGKQ9P215 609 aa3.75□□□□□ -1.81
SKA3-207ENST00000536239 USP15Q9Y4E8 981 aaPredicted RBP3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms