RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 APOL6Q9BWW8 343 aa17.11■□□□□ 0.33
CPSF1-211ENST00000533492 APOL5Q9BWW9 433 aa17.11■□□□□ 0.33
CPSF1-211ENST00000533492 PHF7Q9BWX1 381 aaPredicted RBP17.11■□□□□ 0.33
CPSF1-211ENST00000533492 ZBP1Q9H171 429 aa17.11■□□□□ 0.33
CPSF1-211ENST00000533492 PRMT7Q9NVM4 692 aaPredicted RBP17.11■□□□□ 0.33
CPSF1-211ENST00000533492 STK39Q9UEW8 545 aa17.11■□□□□ 0.33
CPSF1-211ENST00000533492 HES2Q9Y543 173 aa17.11■□□□□ 0.33
CPSF1-211ENST00000533492 HCFC2Q9Y5Z7 792 aa17.11■□□□□ 0.33
CPSF1-211ENST00000533492 STK24Q9Y6E0 443 aa17.11■□□□□ 0.33
CPSF1-211ENST00000533492 CLASP2O75122 1294 aaKnown RBP17.1■□□□□ 0.33
CPSF1-211ENST00000533492 NR1I2O75469 434 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 CYP11B2P19099 503 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 PDIA5Q14554 519 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 AMHR2Q16671 573 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 TMEM132AQ24JP5 1023 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 TPRNQ4KMQ1 711 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 SLC27A1Q6PCB7 646 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 SYCE2Q6PIF2 218 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 RNF135Q8IUD6 432 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 C4orf32Q8N8J7 132 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 AUTS2Q8WXX7 1259 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 TMX3Q96JJ7 454 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 RPGRIP1Q96KN7 1286 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 C2orf40Q9H1Z8 148 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 RNF39Q9H2S5 420 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 C11orf16Q9NQ32 467 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 GIT1Q9Y2X7 761 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 PCDHB6Q9Y5E3 794 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 C5orf42Q9H799 3197 aa17.1■□□□□ 0.33
CPSF1-211ENST00000533492 A0A1B0GUA9 196 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 ARL5CA6NH57 179 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 H3BQV1 296 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 NRP1O14786 923 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 B4GALT5O43286 388 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 B4GALT3O60512 393 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 NPTXRO95502 500 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 MLH1P40692 756 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 OR1G1P47890 313 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 TOB1P50616 345 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-211ENST00000533492 CBX2Q14781 532 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-211ENST00000533492 PPP2R5AQ15172 486 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 CES5AQ6NT32 575 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 CDR2LQ86X02 465 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-211ENST00000533492 DEPTORQ8TB45 409 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 BCL7CQ8WUZ0 217 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-211ENST00000533492 SUSD6Q92537 303 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 PRIMPOLQ96LW4 560 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 S1PR5Q9H228 398 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 MUTYHQ9UIF7 546 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 KIAA1024Q9UPX6 916 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 PRG3Q9Y2Y8 225 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-211ENST00000533492 HCN4Q9Y3Q4 1203 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 IRAK3Q9Y616 596 aa17.09■□□□□ 0.33
CPSF1-211ENST00000533492 PRR33A8MZF0 331 aa17.08■□□□□ 0.32
CPSF1-211ENST00000533492 LOC730098B7Z3J9 87 aa17.08■□□□□ 0.32
CPSF1-211ENST00000533492 LAD1O00515 517 aa17.08■□□□□ 0.32
CPSF1-211ENST00000533492 SSBP05455 408 aaKnown RBP eCLIP17.08■□□□□ 0.32
CPSF1-211ENST00000533492 MCM2P49736 904 aa17.08■□□□□ 0.32
CPSF1-211ENST00000533492 SCNN1GP51170 649 aa17.08■□□□□ 0.32
CPSF1-211ENST00000533492 MAPK6Q16659 721 aa17.08■□□□□ 0.32
CPSF1-211ENST00000533492 KRT79Q5XKE5 535 aa17.08■□□□□ 0.32
CPSF1-211ENST00000533492 SNX29Q8TEQ0 813 aa17.08■□□□□ 0.32
CPSF1-211ENST00000533492 IFT74Q96LB3 600 aa17.08■□□□□ 0.32
CPSF1-211ENST00000533492 ZFP42Q96MM3 310 aa17.08■□□□□ 0.32
CPSF1-211ENST00000533492 EMILIN2Q9BXX0 1053 aa17.08■□□□□ 0.32
CPSF1-211ENST00000533492 BHMT2Q9H2M3 363 aa17.08■□□□□ 0.32
CPSF1-211ENST00000533492 NXF3Q9H4D5 531 aaKnown RBP17.08■□□□□ 0.32
CPSF1-211ENST00000533492 DDX19AQ9NUU7 478 aaKnown RBP17.08■□□□□ 0.32
CPSF1-211ENST00000533492 PARP2Q9UGN5 583 aa17.08■□□□□ 0.32
CPSF1-211ENST00000533492 LIG1P18858 919 aa17.07■□□□□ 0.32
CPSF1-211ENST00000533492 AKAP5P24588 427 aa17.07■□□□□ 0.32
CPSF1-211ENST00000533492 GJB2P29033 226 aa17.07■□□□□ 0.32
CPSF1-211ENST00000533492 ITIH3Q06033 890 aa17.07■□□□□ 0.32
CPSF1-211ENST00000533492 PRPF4BQ13523 1007 aaKnown RBP17.07■□□□□ 0.32
CPSF1-211ENST00000533492 ECM1Q16610 540 aa17.07■□□□□ 0.32
CPSF1-211ENST00000533492 RILPL1Q5EBL4 403 aa17.07■□□□□ 0.32
CPSF1-211ENST00000533492 HERC4Q5GLZ8 1057 aaPredicted RBP17.07■□□□□ 0.32
CPSF1-211ENST00000533492 CDCA2Q69YH5 1023 aaPredicted RBP17.07■□□□□ 0.32
CPSF1-211ENST00000533492 DTHD1Q6ZMT9 781 aa17.07■□□□□ 0.32
CPSF1-211ENST00000533492 PPP4R3CPQ6ZMV5 832 aa17.07■□□□□ 0.32
CPSF1-211ENST00000533492 PPFIBP1Q86W92 1011 aa17.07■□□□□ 0.32
CPSF1-211ENST00000533492 COLGALT2Q8IYK4 626 aa17.07■□□□□ 0.32
CPSF1-211ENST00000533492 IGSF22Q8N9C0 903 aa17.07■□□□□ 0.32
CPSF1-211ENST00000533492 FZD8Q9H461 694 aa17.07■□□□□ 0.32
CPSF1-211ENST00000533492 MRPL17Q9NRX2 175 aaKnown RBP17.07■□□□□ 0.32
CPSF1-211ENST00000533492 MIOSQ9NXC5 875 aa17.07■□□□□ 0.32
CPSF1-211ENST00000533492 DNM3Q9UQ16 869 aa17.07■□□□□ 0.32
CPSF1-211ENST00000533492 SPDYE4A6NLX3 237 aa17.06■□□□□ 0.32
CPSF1-211ENST00000533492 N4BP3O15049 544 aa17.06■□□□□ 0.32
CPSF1-211ENST00000533492 INPPL1O15357 1258 aa17.06■□□□□ 0.32
CPSF1-211ENST00000533492 KLRC2P26717 231 aa17.06■□□□□ 0.32
CPSF1-211ENST00000533492 NAMPTP43490 491 aa17.06■□□□□ 0.32
CPSF1-211ENST00000533492 PTPN14Q15678 1187 aa17.06■□□□□ 0.32
CPSF1-211ENST00000533492 FAM187BQ17R55 369 aa17.06■□□□□ 0.32
CPSF1-211ENST00000533492 BSNDQ8WZ55 320 aa17.06■□□□□ 0.32
CPSF1-211ENST00000533492 KIFAP3Q92845 792 aa17.06■□□□□ 0.32
CPSF1-211ENST00000533492 NECTIN4Q96NY8 510 aa17.06■□□□□ 0.32
CPSF1-211ENST00000533492 RPS6KC1Q96S38 1066 aa17.06■□□□□ 0.32
CPSF1-211ENST00000533492 ADPGKQ9BRR6 497 aa17.06■□□□□ 0.32
CPSF1-211ENST00000533492 COLEC11Q9BWP8 271 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms