RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 TNFSF13BQ9Y275 285 aa15.91■□□□□ 0.14
CPSF1-206ENST00000531480 ZMYM2Q9UBW7 1377 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 GRXCR1A8MXD5 290 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 K7ENM7 598 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 N4BP3O15049 544 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 STAG3L1P0CL83 205 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 IDEP14735 1019 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 NMT1P30419 496 aaKnown RBP15.9■□□□□ 0.14
CPSF1-206ENST00000531480 ASIC1P78348 528 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 ALCAMQ13740 583 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 HERC4Q5GLZ8 1057 aaPredicted RBP15.9■□□□□ 0.14
CPSF1-206ENST00000531480 TWF2Q6IBS0 349 aaKnown RBP15.9■□□□□ 0.14
CPSF1-206ENST00000531480 GPR153Q6NV75 609 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 EPM2AIP1Q7L775 607 aaPredicted RBP15.9■□□□□ 0.14
CPSF1-206ENST00000531480 TMCO2Q7Z6W1 182 aaPredicted RBP15.9■□□□□ 0.14
CPSF1-206ENST00000531480 SMG8Q8ND04 991 aaKnown RBP15.9■□□□□ 0.14
CPSF1-206ENST00000531480 SPATA20Q8TB22 786 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 RSPH1Q8WYR4 309 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 CPB2Q96IY4 423 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 FAM161BQ96MY7 647 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 RAD9AQ99638 391 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 MRPL4Q9BYD3 311 aaKnown RBP15.9■□□□□ 0.14
CPSF1-206ENST00000531480 PBX4Q9BYU1 374 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 BLZF1Q9H2G9 400 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 LMBRD1Q9NUN5 540 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 RNF19AQ9NV58 838 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 INSL6Q9Y581 213 aa15.9■□□□□ 0.14
CPSF1-206ENST00000531480 RALGAPA2Q2PPJ7 1873 aa15.89■□□□□ 0.13
CPSF1-206ENST00000531480 INPPL1O15357 1258 aa15.89■□□□□ 0.13
CPSF1-206ENST00000531480 PRPF40AO75400 957 aaKnown RBP15.89■□□□□ 0.13
CPSF1-206ENST00000531480 CASP5P51878 434 aa15.89■□□□□ 0.13
CPSF1-206ENST00000531480 RAB30Q15771 203 aa15.89■□□□□ 0.13
CPSF1-206ENST00000531480 ATF7IP2Q5U623 682 aa15.89■□□□□ 0.13
CPSF1-206ENST00000531480 ANP32EQ9BTT0 268 aa15.89■□□□□ 0.13
CPSF1-206ENST00000531480 EIF2AQ9BY44 585 aaKnown RBP15.89■□□□□ 0.13
CPSF1-206ENST00000531480 FGFBP2Q9BYJ0 223 aa15.89■□□□□ 0.13
CPSF1-206ENST00000531480 ZHX3Q9H4I2 956 aa15.89■□□□□ 0.13
CPSF1-206ENST00000531480 PCDHB2Q9Y5E7 798 aa15.89■□□□□ 0.13
CPSF1-206ENST00000531480 TRANK1O15050 2925 aa15.89■□□□□ 0.13
CPSF1-206ENST00000531480 TMEM265A0A087WTH1 108 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 EIF3DO15371 548 aaKnown RBP eCLIP15.88■□□□□ 0.13
CPSF1-206ENST00000531480 TOM1L1O75674 476 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 RHOBTB3O94955 611 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 LINC00271P0C7V0 271 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 PRR29P0C7W0 189 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 PBX2P40425 430 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 STRN3Q13033 797 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 KCNB1Q14721 858 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 POSTNQ15063 836 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 ZC2HC1CQ53FD0 456 aaPredicted RBP15.88■□□□□ 0.13
CPSF1-206ENST00000531480 FAM26FQ5R3K3 315 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 L1TD1Q5T7N2 865 aaKnown RBP15.88■□□□□ 0.13
CPSF1-206ENST00000531480 EEF1DP3Q658K8 133 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 CCDC34Q96HJ3 373 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 TARS2Q9BW92 718 aaKnown RBP15.88■□□□□ 0.13
CPSF1-206ENST00000531480 MRPL44Q9H9J2 332 aaKnown RBP15.88■□□□□ 0.13
CPSF1-206ENST00000531480 USP20Q9Y2K6 914 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 YBX2Q9Y2T7 364 aaKnown RBP15.88■□□□□ 0.13
CPSF1-206ENST00000531480 IPPQ9Y573 584 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 PCDHB7Q9Y5E2 793 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 PCDHB13Q9Y5F0 798 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 STYXL1Q9Y6J8 313 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 KIAA1671Q9BY89 1806 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 NLRC5Q86WI3 1866 aa15.88■□□□□ 0.13
CPSF1-206ENST00000531480 HOXA2O43364 376 aa15.87■□□□□ 0.13
CPSF1-206ENST00000531480 TLL1O43897 1013 aa15.87■□□□□ 0.13
CPSF1-206ENST00000531480 MYBP10242 640 aa15.87■□□□□ 0.13
CPSF1-206ENST00000531480 DNAJB2P25686 324 aa15.87■□□□□ 0.13
CPSF1-206ENST00000531480 RABGGTBP53611 331 aa15.87■□□□□ 0.13
CPSF1-206ENST00000531480 MCL1Q07820 350 aa15.87■□□□□ 0.13
CPSF1-206ENST00000531480 PSMD2Q13200 908 aa15.87■□□□□ 0.13
CPSF1-206ENST00000531480 BMT2Q1RMZ1 405 aa15.87■□□□□ 0.13
CPSF1-206ENST00000531480 DCAF4L1Q3SXM0 396 aa15.87■□□□□ 0.13
CPSF1-206ENST00000531480 CLLU1OSQ5K130 101 aa15.87■□□□□ 0.13
CPSF1-206ENST00000531480 SLC39A4Q6P5W5 647 aa15.87■□□□□ 0.13
CPSF1-206ENST00000531480 AGMOQ6ZNB7 445 aa15.87■□□□□ 0.13
CPSF1-206ENST00000531480 CMTR2Q8IYT2 770 aaKnown RBP15.87■□□□□ 0.13
CPSF1-206ENST00000531480 ZNF507Q8TCN5 953 aa15.87■□□□□ 0.13
CPSF1-206ENST00000531480 CITO14578 2027 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 MEIS3P2A8K0S8 358 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 UPP2O95045 317 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 RPN1P04843 607 aaKnown RBP15.86■□□□□ 0.13
CPSF1-206ENST00000531480 MCF2P10911 925 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 HOXD13P35453 343 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 KCNA1Q09470 495 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 KMT5BQ4FZB7 885 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 TPRNQ4KMQ1 711 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 MPZL3Q6UWV2 235 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 CDR2LQ86X02 465 aaPredicted RBP15.86■□□□□ 0.13
CPSF1-206ENST00000531480 GLIS3Q8NEA6 775 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 CLP1Q92989 425 aaKnown RBP15.86■□□□□ 0.13
CPSF1-206ENST00000531480 HPS3Q969F9 1004 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 PGBD4Q96DM1 585 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 CASD1Q96PB1 797 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 ADPGKQ9BRR6 497 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 HAPLN2Q9GZV7 340 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 TMEM117Q9H0C3 514 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 CDT1Q9H211 546 aa15.86■□□□□ 0.13
CPSF1-206ENST00000531480 NXF3Q9H4D5 531 aaKnown RBP15.86■□□□□ 0.13
CPSF1-206ENST00000531480 UBN1Q9NPG3 1134 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms