RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 ENDOD1O94919 500 aa5.08□□□□□ -1.6
CD44-233ENST00000531141 SNUPNO95149 360 aaKnown RBP5.08□□□□□ -1.6
CD44-233ENST00000531141 CCND1P24385 295 aa5.08□□□□□ -1.6
CD44-233ENST00000531141 ECHS1P30084 290 aa5.08□□□□□ -1.6
CD44-233ENST00000531141 CRHR1P34998 444 aa5.08□□□□□ -1.6
CD44-233ENST00000531141 MCL1Q07820 350 aa5.08□□□□□ -1.6
CD44-233ENST00000531141 PIN1Q13526 163 aaPredicted RBP5.08□□□□□ -1.6
CD44-233ENST00000531141 LCE5AQ5TCM9 118 aa5.08□□□□□ -1.6
CD44-233ENST00000531141 EFCAB2Q5VUJ9 269 aa5.08□□□□□ -1.6
CD44-233ENST00000531141 TCTN3Q6NUS6 607 aa5.08□□□□□ -1.6
CD44-233ENST00000531141 LIMS2Q7Z4I7 341 aa5.08□□□□□ -1.6
CD44-233ENST00000531141 POLNQ7Z5Q5 900 aa5.08□□□□□ -1.6
CD44-233ENST00000531141 CMTM4Q8IZR5 234 aa5.08□□□□□ -1.6
CD44-233ENST00000531141 GPR156Q8NFN8 814 aa5.08□□□□□ -1.6
CD44-233ENST00000531141 RIN2Q8WYP3 895 aaPredicted RBP5.08□□□□□ -1.6
CD44-233ENST00000531141 TUBD1Q9UJT1 453 aa5.08□□□□□ -1.6
CD44-233ENST00000531141 PATE3B3GLJ2 98 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 AKR1B10O60218 316 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 GASTP01350 101 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 SYN1P17600 705 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 C5AR1P21730 350 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 WASP42768 502 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 ADKP55263 362 aaKnown RBP5.07□□□□□ -1.6
CD44-233ENST00000531141 NPEPPSP55786 919 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 PPP3CAQ08209 521 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 ABHD15Q6UXT9 468 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 FUKQ8N0W3 1084 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 THEMISQ8N1K5 641 aaPredicted RBP5.07□□□□□ -1.6
CD44-233ENST00000531141 DNERQ8NFT8 737 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 HOXB13Q92826 284 aaPredicted RBP5.07□□□□□ -1.6
CD44-233ENST00000531141 HOOK2Q96ED9 719 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 SAMD11Q96NU1 681 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 TCF25Q9BQ70 676 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 AGO3Q9H9G7 860 aaKnown RBP5.07□□□□□ -1.6
CD44-233ENST00000531141 DMRT3Q9NQL9 472 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 AASDHPPTQ9NRN7 309 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 GPRC5DQ9NZD1 345 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 NCDNQ9UBB6 729 aa5.07□□□□□ -1.6
CD44-233ENST00000531141 ZFR2Q9UPR6 939 aaKnown RBP5.07□□□□□ -1.6
CD44-233ENST00000531141 LUC7L2Q9Y383 392 aaKnown RBP5.07□□□□□ -1.6
CD44-233ENST00000531141 UBE2QL1A1L167 161 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 FOXS1O43638 330 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 ITGA10O75578 1167 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 SELENOPP49908 381 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 GRM7Q14831 915 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 ACAP1Q15027 740 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 MFSD5Q6N075 450 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 CMTR2Q8IYT2 770 aaKnown RBP5.06□□□□□ -1.6
CD44-233ENST00000531141 RELTQ969Z4 430 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 ARL8AQ96BM9 186 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 IL17RAQ96F46 866 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 SLC2A13Q96QE2 648 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 MPHOSPH9Q99550 1183 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 ENKD1Q9H0I2 346 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 CSRNP2Q9H175 543 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 BCO1Q9HAY6 547 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 TCF7L1Q9HCS4 588 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 PLA2G3Q9NZ20 509 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 TRPS1Q9UHF7 1281 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 GIT1Q9Y2X7 761 aa5.06□□□□□ -1.6
CD44-233ENST00000531141 ABLIM3O94929 683 aa5.05□□□□□ -1.6
CD44-233ENST00000531141 COMTP21964 271 aa5.05□□□□□ -1.6
CD44-233ENST00000531141 MSX2P35548 267 aaPredicted RBP5.05□□□□□ -1.6
CD44-233ENST00000531141 GZMKP49863 264 aa5.05□□□□□ -1.6
CD44-233ENST00000531141 KIF23Q02241 960 aaPredicted RBP5.05□□□□□ -1.6
CD44-233ENST00000531141 PLP2Q04941 152 aa5.05□□□□□ -1.6
CD44-233ENST00000531141 HS1BP3Q53T59 392 aa5.05□□□□□ -1.6
CD44-233ENST00000531141 LILRA6Q6PI73 481 aa5.05□□□□□ -1.6
CD44-233ENST00000531141 FAM111BQ6SJ93 734 aa5.05□□□□□ -1.6
CD44-233ENST00000531141 PDZD4Q76G19 769 aaPredicted RBP5.05□□□□□ -1.6
CD44-233ENST00000531141 MIGA2Q7L4E1 593 aa5.05□□□□□ -1.6
CD44-233ENST00000531141 CPA6Q8N4T0 437 aa5.05□□□□□ -1.6
CD44-233ENST00000531141 LILRA3Q8N6C8 439 aaPredicted RBP5.05□□□□□ -1.6
CD44-233ENST00000531141 OR7D4Q8NG98 312 aa5.05□□□□□ -1.6
CD44-233ENST00000531141 OR5M3Q8NGP4 307 aa5.05□□□□□ -1.6
CD44-233ENST00000531141 LOXL4Q96JB6 756 aa5.05□□□□□ -1.6
CD44-233ENST00000531141 CAMKK2Q96RR4 588 aa5.05□□□□□ -1.6
CD44-233ENST00000531141 CDC5LQ99459 802 aaKnown RBP5.05□□□□□ -1.6
CD44-233ENST00000531141 NUP88Q99567 741 aaPredicted RBP5.05□□□□□ -1.6
CD44-233ENST00000531141 LANCL2Q9NS86 450 aa5.05□□□□□ -1.6
CD44-233ENST00000531141 DNM3Q9UQ16 869 aa5.05□□□□□ -1.6
CD44-233ENST00000531141 FOXD2O60548 495 aaPredicted RBP5.04□□□□□ -1.6
CD44-233ENST00000531141 DTNBO60941 627 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 IPO13O94829 963 aaKnown RBP5.04□□□□□ -1.6
CD44-233ENST00000531141 ZRANB2O95218 330 aaKnown RBP eCLIP5.04□□□□□ -1.6
CD44-233ENST00000531141 VCAM1P19320 739 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 CASRP41180 1078 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 ICAM4Q14773 271 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 ODF1Q14990 250 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 NOMO1Q15155 1222 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 FKBP15Q5T1M5 1219 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 TRMT2AQ8IZ69 625 aaKnown RBP5.04□□□□□ -1.6
CD44-233ENST00000531141 D2HGDHQ8N465 521 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 PPM1NQ8N819 430 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 NRG4Q8WWG1 115 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 JDP2Q8WYK2 163 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 HDAC10Q969S8 669 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 FAM89AQ96GI7 184 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 BORCS6Q96GS4 357 aa5.04□□□□□ -1.6
CD44-233ENST00000531141 TMEM176AQ96HP8 235 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms