RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 MARCH5Q9NX47 278 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 SPG21Q9NZD8 308 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 CACNG4Q9UBN1 327 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 KIF3AQ9Y496 699 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 CNTNAP2Q9UHC6 1331 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 PLXNA3P51805 1871 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 NPHP3-ACAD11A0A0J9YXS1 232 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 ARL5CA6NH57 179 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 SFI1A8K8P3 1242 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 K7ELQ4 463 aaPredicted RBP11.79□□□□□ -0.52
CD44-227ENST00000528086 LILRB3O75022 631 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 HIP1RO75146 1068 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 NPTXRO95502 500 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 POMCP01189 267 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 AKAP5P24588 427 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 MLH1P40692 756 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 NAMPTP43490 491 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 NPTX2P47972 431 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 PCBP1Q15365 356 aaKnown RBP eCLIP11.79□□□□□ -0.52
CD44-227ENST00000528086 NAB2Q15742 525 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 PLPP4Q5VZY2 271 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 PTCRAQ6ISU1 281 aaPredicted RBP11.79□□□□□ -0.52
CD44-227ENST00000528086 NOTUMQ6P988 496 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 GLB1LQ6UWU2 654 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 TAS1R1Q7RTX1 841 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 FAM178BQ8IXR5 827 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 COLGALT2Q8IYK4 626 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 RNF168Q8IYW5 571 aaPredicted RBP11.79□□□□□ -0.52
CD44-227ENST00000528086 ABI1Q8IZP0 508 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 AUTS2Q8WXX7 1259 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 CCDC51Q96ER9 411 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 IGSF21Q96ID5 467 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 PTPRHQ9HD43 1115 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 AAASQ9NRG9 546 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 RNF216Q9NWF9 866 aaPredicted RBP11.79□□□□□ -0.52
CD44-227ENST00000528086 ARHGAP28Q9P2N2 729 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 CDH22Q9UJ99 828 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 VWA8A3KMH1 1905 aa11.79□□□□□ -0.52
CD44-227ENST00000528086 DOCK6Q96HP0 2047 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 VPS37CA5D8V6 355 aaPredicted RBP11.78□□□□□ -0.52
CD44-227ENST00000528086 C2orf71A6NGG8 1288 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 TNFRSF10AO00220 468 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 ACKR2O00590 384 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 PTGESO14684 152 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 MBTPS2O43462 519 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 ZC3H11AO75152 810 aaKnown RBP eCLIP11.78□□□□□ -0.52
CD44-227ENST00000528086 ERLIN2O94905 339 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 PRKCBP05771 671 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 SKIP12755 728 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 SCNN1GP51170 649 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 AAK1Q2M2I8 961 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 KRT79Q5XKE5 535 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 SYCE2Q6PIF2 218 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 BRAPQ7Z569 592 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 MRPL43Q8N983 215 aaKnown RBP11.78□□□□□ -0.52
CD44-227ENST00000528086 SYT2Q8N9I0 419 aaPredicted RBP11.78□□□□□ -0.52
CD44-227ENST00000528086 USP28Q96RU2 1077 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 TCF25Q9BQ70 676 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 PAAF1Q9BRP4 392 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 MRPL9Q9BYD2 267 aaKnown RBP11.78□□□□□ -0.52
CD44-227ENST00000528086 GBP3Q9H0R5 595 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 ZBP1Q9H171 429 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 S1PR5Q9H228 398 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 KLK14Q9P0G3 267 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 FBXO2Q9UK22 296 aaPredicted RBP11.78□□□□□ -0.52
CD44-227ENST00000528086 BARX2Q9UMQ3 279 aaPredicted RBP11.78□□□□□ -0.52
CD44-227ENST00000528086 DNM3Q9UQ16 869 aa11.78□□□□□ -0.52
CD44-227ENST00000528086 PDCD11Q14690 1871 aaKnown RBP11.78□□□□□ -0.52
CD44-227ENST00000528086 A0A087X0B3 334 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 C19orf67A6NJJ6 358 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 NRP1O14786 923 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 PLA2G4BP0C869 781 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 ITGA4P13612 1032 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 GUCY2CP25092 1073 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 PEX3P56589 373 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 CACNB1Q02641 598 aaPredicted RBP11.77□□□□□ -0.53
CD44-227ENST00000528086 RAD51AP2Q09MP3 1159 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 KARSQ15046 597 aaKnown RBP11.77□□□□□ -0.53
CD44-227ENST00000528086 ZRSR1Q15695 479 aaKnown RBP11.77□□□□□ -0.53
CD44-227ENST00000528086 CSPP1Q1MSJ5 1256 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 SPECC1Q5M775 1068 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 KANK3Q6NY19 840 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 SLC27A1Q6PCB7 646 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 CD300LGQ6UXG3 332 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 TMEM184AQ6ZMB5 413 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 DDX53Q86TM3 631 aaKnown RBP11.77□□□□□ -0.53
CD44-227ENST00000528086 CABP7Q86V35 215 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 TMEM130Q8N3G9 435 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 CEP120Q8N960 986 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 SMRP1Q8NCR6 262 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 RABGGTAQ92696 567 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 PGBD4Q96DM1 585 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 EPSTI1Q96J88 318 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 PRIMPOLQ96LW4 560 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 CCDC43Q96MW1 224 aaKnown RBP11.77□□□□□ -0.53
CD44-227ENST00000528086 CLIC6Q96NY7 704 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 FIZ1Q96SL8 496 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 NTPCRQ9BSD7 190 aaKnown RBP11.77□□□□□ -0.53
CD44-227ENST00000528086 APOL6Q9BWW8 343 aa11.77□□□□□ -0.53
CD44-227ENST00000528086 HAPLN2Q9GZV7 340 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms