RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 XPNPEP1Q9NQW7 623 aa26.3■■□□□ 1.8
CPSF1-202ENST00000527827 PDRG1Q9NUG6 133 aa26.3■■□□□ 1.8
CPSF1-202ENST00000527827 PRG3Q9Y2Y8 225 aaPredicted RBP26.3■■□□□ 1.8
CPSF1-202ENST00000527827 IPPQ9Y573 584 aa26.3■■□□□ 1.8
CPSF1-202ENST00000527827 RIF1Q5UIP0 2472 aaKnown RBP26.29■■□□□ 1.8
CPSF1-202ENST00000527827 INPPL1O15357 1258 aa26.29■■□□□ 1.8
CPSF1-202ENST00000527827 DTNBO60941 627 aa26.29■■□□□ 1.8
CPSF1-202ENST00000527827 URODP06132 367 aa26.29■■□□□ 1.8
CPSF1-202ENST00000527827 ITGA4P13612 1032 aa26.29■■□□□ 1.8
CPSF1-202ENST00000527827 TDGQ13569 410 aa26.29■■□□□ 1.8
CPSF1-202ENST00000527827 CTTNQ14247 550 aaKnown RBP26.29■■□□□ 1.8
CPSF1-202ENST00000527827 EARS2Q5JPH6 523 aaKnown RBP26.29■■□□□ 1.8
CPSF1-202ENST00000527827 NCAPH2Q6IBW4 605 aa26.29■■□□□ 1.8
CPSF1-202ENST00000527827 RNF168Q8IYW5 571 aaPredicted RBP26.29■■□□□ 1.8
CPSF1-202ENST00000527827 CNNM3Q8NE01 707 aa26.29■■□□□ 1.8
CPSF1-202ENST00000527827 CMASQ8NFW8 434 aaPredicted RBP26.29■■□□□ 1.8
CPSF1-202ENST00000527827 RPS6KC1Q96S38 1066 aa26.29■■□□□ 1.8
CPSF1-202ENST00000527827 ZSWIM4Q9H7M6 989 aa26.29■■□□□ 1.8
CPSF1-202ENST00000527827 UBN1Q9NPG3 1134 aa26.29■■□□□ 1.8
CPSF1-202ENST00000527827 TSPAN1O60635 241 aa26.28■■□□□ 1.8
CPSF1-202ENST00000527827 NPR3P17342 541 aa26.28■■□□□ 1.8
CPSF1-202ENST00000527827 AK2P54819 239 aa26.28■■□□□ 1.8
CPSF1-202ENST00000527827 PTENP60484 403 aa26.28■■□□□ 1.8
CPSF1-202ENST00000527827 DSC1Q08554 894 aa26.28■■□□□ 1.8
CPSF1-202ENST00000527827 GAD1Q99259 594 aa26.28■■□□□ 1.8
CPSF1-202ENST00000527827 MTRQ99707 1265 aa26.28■■□□□ 1.8
CPSF1-202ENST00000527827 KCNK12Q9HB15 430 aa26.28■■□□□ 1.8
CPSF1-202ENST00000527827 MAN1C1Q9NR34 630 aa26.28■■□□□ 1.8
CPSF1-202ENST00000527827 MIOSQ9NXC5 875 aa26.28■■□□□ 1.8
CPSF1-202ENST00000527827 DUSP12Q9UNI6 340 aa26.28■■□□□ 1.8
CPSF1-202ENST00000527827 STK36Q9NRP7 1315 aa26.28■■□□□ 1.8
CPSF1-202ENST00000527827 ARL5CA6NH57 179 aa26.27■■□□□ 1.8
CPSF1-202ENST00000527827 TEX28O15482 410 aa26.27■■□□□ 1.8
CPSF1-202ENST00000527827 N4BP1O75113 896 aaKnown RBP26.27■■□□□ 1.8
CPSF1-202ENST00000527827 CDKL5O76039 1030 aa26.27■■□□□ 1.8
CPSF1-202ENST00000527827 ERLIN2O94905 339 aa26.27■■□□□ 1.8
CPSF1-202ENST00000527827 OR1G1P47890 313 aa26.27■■□□□ 1.8
CPSF1-202ENST00000527827 CYP4A11Q02928 519 aa26.27■■□□□ 1.8
CPSF1-202ENST00000527827 KIAA0319Q5VV43 1072 aa26.27■■□□□ 1.8
CPSF1-202ENST00000527827 FLCNQ8NFG4 579 aa26.27■■□□□ 1.8
CPSF1-202ENST00000527827 CPB2Q96IY4 423 aa26.27■■□□□ 1.8
CPSF1-202ENST00000527827 SNX27Q96L92 541 aa26.27■■□□□ 1.8
CPSF1-202ENST00000527827 NAP1L4Q99733 375 aaKnown RBP26.27■■□□□ 1.8
CPSF1-202ENST00000527827 HES2Q9Y543 173 aa26.27■■□□□ 1.8
CPSF1-202ENST00000527827 MTCL1Q9Y4B5 1905 aaKnown RBP26.27■■□□□ 1.8
CPSF1-202ENST00000527827 FAM186AA6NE01 2351 aa26.27■■□□□ 1.8
CPSF1-202ENST00000527827 PRR23AA6NEV1 266 aa26.26■■□□□ 1.79
CPSF1-202ENST00000527827 FAM205CA6NFA0 338 aa26.26■■□□□ 1.79
CPSF1-202ENST00000527827 F8W810 466 aa26.26■■□□□ 1.79
CPSF1-202ENST00000527827 PI15O43692 258 aa26.26■■□□□ 1.79
CPSF1-202ENST00000527827 MARCH6O60337 910 aa26.26■■□□□ 1.79
CPSF1-202ENST00000527827 AXLP30530 894 aa26.26■■□□□ 1.79
CPSF1-202ENST00000527827 MLH1P40692 756 aa26.26■■□□□ 1.79
CPSF1-202ENST00000527827 PCBP1Q15365 356 aaKnown RBP eCLIP26.26■■□□□ 1.79
CPSF1-202ENST00000527827 IFNLR1Q8IU57 520 aaPredicted RBP26.26■■□□□ 1.79
CPSF1-202ENST00000527827 RXFP1Q9HBX9 757 aa26.26■■□□□ 1.79
CPSF1-202ENST00000527827 SSX2IPQ9Y2D8 614 aa26.26■■□□□ 1.79
CPSF1-202ENST00000527827 DOCK8Q8NF50 2099 aa26.26■■□□□ 1.79
CPSF1-202ENST00000527827 SPTBN4Q9H254 2564 aa26.25■■□□□ 1.79
CPSF1-202ENST00000527827 SLITRK3O94933 977 aa26.25■■□□□ 1.79
CPSF1-202ENST00000527827 ADH1AP07327 375 aa26.25■■□□□ 1.79
CPSF1-202ENST00000527827 XBP1P17861 261 aa26.25■■□□□ 1.79
CPSF1-202ENST00000527827 AOC1P19801 751 aa26.25■■□□□ 1.79
CPSF1-202ENST00000527827 GLUD2P49448 558 aa26.25■■□□□ 1.79
CPSF1-202ENST00000527827 SCNN1GP51170 649 aa26.25■■□□□ 1.79
CPSF1-202ENST00000527827 MXD4Q14582 209 aaPredicted RBP26.25■■□□□ 1.79
CPSF1-202ENST00000527827 AMHR2Q16671 573 aa26.25■■□□□ 1.79
CPSF1-202ENST00000527827 NOTUMQ6P988 496 aa26.25■■□□□ 1.79
CPSF1-202ENST00000527827 TPH2Q8IWU9 490 aa26.25■■□□□ 1.79
CPSF1-202ENST00000527827 CCDC51Q96ER9 411 aa26.25■■□□□ 1.79
CPSF1-202ENST00000527827 ZFP42Q96MM3 310 aa26.25■■□□□ 1.79
CPSF1-202ENST00000527827 CSRNP2Q9H175 543 aa26.25■■□□□ 1.79
CPSF1-202ENST00000527827 VPS13AQ96RL7 3174 aa26.25■■□□□ 1.79
CPSF1-202ENST00000527827 CCDC195A0A1B0GUA6 201 aa26.24■■□□□ 1.79
CPSF1-202ENST00000527827 CTDNEP1O95476 244 aa26.24■■□□□ 1.79
CPSF1-202ENST00000527827 MYBP10242 640 aa26.24■■□□□ 1.79
CPSF1-202ENST00000527827 DSG1Q02413 1049 aa26.24■■□□□ 1.79
CPSF1-202ENST00000527827 POU5F1BQ06416 359 aa26.24■■□□□ 1.79
CPSF1-202ENST00000527827 SLFN12Q8IYM2 578 aa26.24■■□□□ 1.79
CPSF1-202ENST00000527827 ASAP3Q8TDY4 903 aa26.24■■□□□ 1.79
CPSF1-202ENST00000527827 RHOBTB2Q9BYZ6 727 aa26.24■■□□□ 1.79
CPSF1-202ENST00000527827 WDR6Q9NNW5 1121 aaKnown RBP26.24■■□□□ 1.79
CPSF1-202ENST00000527827 IGSF9Q9P2J2 1179 aa26.24■■□□□ 1.79
CPSF1-202ENST00000527827 TPCN1Q9ULQ1 816 aa26.24■■□□□ 1.79
CPSF1-202ENST00000527827 DMDP11532 3685 aa26.24■■□□□ 1.79
CPSF1-202ENST00000527827 INO80B-WBP1J3KQ70 363 aa26.23■■□□□ 1.79
CPSF1-202ENST00000527827 PFKFB2O60825 505 aa26.23■■□□□ 1.79
CPSF1-202ENST00000527827 BAG4O95429 457 aaKnown RBP26.23■■□□□ 1.79
CPSF1-202ENST00000527827 GLUD1P00367 558 aa26.23■■□□□ 1.79
CPSF1-202ENST00000527827 MBTD1Q05BQ5 628 aa26.23■■□□□ 1.79
CPSF1-202ENST00000527827 CAPSQ13938 189 aa26.23■■□□□ 1.79
CPSF1-202ENST00000527827 CYP26C1Q6V0L0 522 aa26.23■■□□□ 1.79
CPSF1-202ENST00000527827 FRMD5Q7Z6J6 570 aa26.23■■□□□ 1.79
CPSF1-202ENST00000527827 EIF2AK1Q9BQI3 630 aaKnown RBP26.23■■□□□ 1.79
CPSF1-202ENST00000527827 APOL6Q9BWW8 343 aa26.23■■□□□ 1.79
CPSF1-202ENST00000527827 CHST7Q9NS84 486 aa26.23■■□□□ 1.79
CPSF1-202ENST00000527827 NARSO43776 548 aaKnown RBP26.22■■□□□ 1.79
CPSF1-202ENST00000527827 RFPL2O75678 378 aa26.22■■□□□ 1.79
CPSF1-202ENST00000527827 LYPLA2O95372 231 aa26.22■■□□□ 1.79
CPSF1-202ENST00000527827 ARF4P18085 180 aaPredicted RBP26.22■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms