RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 PRG3Q9Y2Y8 225 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-201ENST00000526271 IPPQ9Y573 584 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 MYH15Q9Y2K3 1946 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 C2CD2LO14523 706 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 SOD2P04179 222 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 SKIP12755 728 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 KLRC2P26717 231 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 SCRN1Q12765 414 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 STK3Q13188 491 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 TDGQ13569 410 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 CTTNQ14247 550 aaKnown RBP15.96■□□□□ 0.15
CPSF1-201ENST00000526271 EMC2Q15006 297 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 CCDC149Q6ZUS6 474 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 SRGAP1Q7Z6B7 1085 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 POTEDQ86YR6 584 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 C4orf19Q8IY42 314 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 CCDC105Q8IYK2 499 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 PLCD3Q8N3E9 789 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 FLCNQ8NFG4 579 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 ASAP3Q8TDY4 903 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 RSPH1Q8WYR4 309 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 TNFRSF25Q93038 417 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 ZNF274Q96GC6 653 aaPredicted RBP15.96■□□□□ 0.15
CPSF1-201ENST00000526271 DYDC2Q96IM9 177 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 CPB2Q96IY4 423 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 CEP170P1Q96L14 293 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 LXNQ9BS40 222 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 INO80BQ9C086 356 aaPredicted RBP15.96■□□□□ 0.15
CPSF1-201ENST00000526271 FAN1Q9Y2M0 1017 aa15.96■□□□□ 0.15
CPSF1-201ENST00000526271 A0A087WWV3 80 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 ARL5CA6NH57 179 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 P4HBP07237 508 aaKnown RBP15.95■□□□□ 0.14
CPSF1-201ENST00000526271 SPATA31D3P0C874 917 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 IGFBP6P24592 240 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-201ENST00000526271 MLH1P40692 756 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 SCNN1GP51170 649 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 PTENP60484 403 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 PPP4R3AQ6IN85 833 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 C15orf39Q6ZRI6 1047 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 SPATA31D4Q6ZUB0 917 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 PPFIBP1Q86W92 1011 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 CDR2LQ86X02 465 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-201ENST00000526271 RNF149Q8NC42 400 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 RABGGTAQ92696 567 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 PGBD4Q96DM1 585 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 GPR62Q9BZJ7 368 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 WDR6Q9NNW5 1121 aaKnown RBP15.95■□□□□ 0.14
CPSF1-201ENST00000526271 CHST7Q9NS84 486 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 TRIP11Q15643 1979 aa15.95■□□□□ 0.14
CPSF1-201ENST00000526271 CNTNAP2Q9UHC6 1331 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 TTLL13PA6NNM8 815 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 B4GALT5O43286 388 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 SLITRK3O94933 977 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 ALDH2P05091 517 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 FDPSP14324 419 aaKnown RBP15.94■□□□□ 0.14
CPSF1-201ENST00000526271 YWHABP31946 246 aaKnown RBP15.94■□□□□ 0.14
CPSF1-201ENST00000526271 DSG1Q02413 1049 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 CYP4A11Q02928 519 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 MBTD1Q05BQ5 628 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 EPHA7Q15375 998 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 LILRA6Q6PI73 481 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 OTOP3Q7RTS5 596 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 KRT25Q7Z3Z0 450 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 IFNLR1Q8IU57 520 aaPredicted RBP15.94■□□□□ 0.14
CPSF1-201ENST00000526271 SIX5Q8N196 739 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 PSPC1Q8WXF1 523 aaKnown RBP15.94■□□□□ 0.14
CPSF1-201ENST00000526271 FAM20AQ96MK3 541 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 PAAF1Q9BRP4 392 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 RHOBTB2Q9BYZ6 727 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 C22orf23Q9BZE7 217 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 IRF2BPLQ9H1B7 796 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 NXF3Q9H4D5 531 aaKnown RBP15.94■□□□□ 0.14
CPSF1-201ENST00000526271 MRPL17Q9NRX2 175 aaKnown RBP15.94■□□□□ 0.14
CPSF1-201ENST00000526271 NCOR2Q9Y618 2525 aa15.94■□□□□ 0.14
CPSF1-201ENST00000526271 CCDC195A0A1B0GUA6 201 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 EDN1P05305 212 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 ARF4P18085 180 aaPredicted RBP15.93■□□□□ 0.14
CPSF1-201ENST00000526271 RPL17P18621 184 aaKnown RBP15.93■□□□□ 0.14
CPSF1-201ENST00000526271 PSMA5P28066 241 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 ARL2P36404 184 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 RFC5P40937 340 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 AK2P54819 239 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 CAPSQ13938 189 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 GALNT17Q6IS24 598 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 PIK3AP1Q6ZUJ8 805 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 NEK8Q86SG6 692 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 TRIM22Q8IYM9 498 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 SLC44A3Q8N4M1 653 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 DTWD2Q8NBA8 298 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 URGCPQ8TCY9 931 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 SLC7A3Q8WY07 619 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 RPP25Q9BUL9 199 aaKnown RBP15.93■□□□□ 0.14
CPSF1-201ENST00000526271 EMILIN2Q9BXX0 1053 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 DLGAP2Q9P1A6 1054 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 EPS15L1Q9UBC2 864 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 TPCN1Q9ULQ1 816 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 CLUHO75153 1309 aa15.93■□□□□ 0.14
CPSF1-201ENST00000526271 CFHP08603 1231 aa15.92■□□□□ 0.14
CPSF1-201ENST00000526271 ITGA4P13612 1032 aa15.92■□□□□ 0.14
CPSF1-201ENST00000526271 GLRA2P23416 452 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms