RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 MIOSQ9NXC5 875 aa22.76■■□□□ 1.23
SQSTM1-215ENST00000514093 NUMBLQ9Y6R0 609 aa22.76■■□□□ 1.23
SQSTM1-215ENST00000514093 CNTNAP2Q9UHC6 1331 aa22.76■■□□□ 1.23
SQSTM1-215ENST00000514093 DOCK8Q8NF50 2099 aa22.75■■□□□ 1.23
SQSTM1-215ENST00000514093 OTOGLQ3ZCN5 2332 aa22.75■■□□□ 1.23
SQSTM1-215ENST00000514093 KRT37O76014 449 aa22.75■■□□□ 1.23
SQSTM1-215ENST00000514093 AKAP17AQ02040 695 aaKnown RBP22.75■■□□□ 1.23
SQSTM1-215ENST00000514093 HTR4Q13639 388 aa22.75■■□□□ 1.23
SQSTM1-215ENST00000514093 Q4G0T1 1027 aa22.75■■□□□ 1.23
SQSTM1-215ENST00000514093 Q6ZUG5 572 aa22.75■■□□□ 1.23
SQSTM1-215ENST00000514093 RNF168Q8IYW5 571 aaPredicted RBP22.75■■□□□ 1.23
SQSTM1-215ENST00000514093 MAML2Q8IZL2 1156 aaPredicted RBP22.75■■□□□ 1.23
SQSTM1-215ENST00000514093 PRPF31Q8WWY3 499 aaKnown RBP22.75■■□□□ 1.23
SQSTM1-215ENST00000514093 GAD1Q99259 594 aa22.75■■□□□ 1.23
SQSTM1-215ENST00000514093 SLC26A6Q9BXS9 759 aa22.75■■□□□ 1.23
SQSTM1-215ENST00000514093 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.75■■□□□ 1.231e-7■■■■□ 21.3
SQSTM1-215ENST00000514093 ANHXE9PGG2 379 aa22.74■■□□□ 1.23
SQSTM1-215ENST00000514093 TGM5O43548 720 aa22.74■■□□□ 1.23
SQSTM1-215ENST00000514093 EFEMP2O95967 443 aa22.74■■□□□ 1.23
SQSTM1-215ENST00000514093 ITGA4P13612 1032 aa22.74■■□□□ 1.23
SQSTM1-215ENST00000514093 NCLP19338 710 aaKnown RBP22.74■■□□□ 1.23
SQSTM1-215ENST00000514093 DSG1Q02413 1049 aa22.74■■□□□ 1.23
SQSTM1-215ENST00000514093 TSGA10IPQ3SY00 556 aa22.74■■□□□ 1.23
SQSTM1-215ENST00000514093 SUMF1Q8NBK3 374 aa22.74■■□□□ 1.23
SQSTM1-215ENST00000514093 CCDC148Q8NFR7 591 aa22.74■■□□□ 1.23
SQSTM1-215ENST00000514093 PJA1Q8NG27 643 aa22.74■■□□□ 1.23
SQSTM1-215ENST00000514093 BRF1Q92994 677 aa22.74■■□□□ 1.23
SQSTM1-215ENST00000514093 CNTNAP3BQ96NU0 1288 aa22.74■■□□□ 1.23
SQSTM1-215ENST00000514093 JPH2Q9BR39 696 aaPredicted RBP22.74■■□□□ 1.23
SQSTM1-215ENST00000514093 CNTNAP3Q9BZ76 1288 aa22.74■■□□□ 1.23
SQSTM1-215ENST00000514093 CEP250Q9BV73 2442 aa22.74■■□□□ 1.23
SQSTM1-215ENST00000514093 RPL17P18621 184 aaKnown RBP22.73■■□□□ 1.23
SQSTM1-215ENST00000514093 MLH1P40692 756 aa22.73■■□□□ 1.23
SQSTM1-215ENST00000514093 NLRP5P59047 1200 aa22.73■■□□□ 1.23
SQSTM1-215ENST00000514093 PSMC5P62195 406 aa22.73■■□□□ 1.23
SQSTM1-215ENST00000514093 GPC5P78333 572 aa22.73■■□□□ 1.23
SQSTM1-215ENST00000514093 IRX6P78412 446 aaPredicted RBP22.73■■□□□ 1.23
SQSTM1-215ENST00000514093 EIF2AQ9BY44 585 aaKnown RBP22.73■■□□□ 1.23
SQSTM1-215ENST00000514093 PRKD2Q9BZL6 878 aa22.73■■□□□ 1.23
SQSTM1-215ENST00000514093 SLC2A4RGQ9NR83 387 aa22.73■■□□□ 1.23
SQSTM1-215ENST00000514093 HES2Q9Y543 173 aa22.73■■□□□ 1.23
SQSTM1-215ENST00000514093 IPPQ9Y573 584 aa22.73■■□□□ 1.23
SQSTM1-215ENST00000514093 COL4A3Q01955 1670 aa22.73■■□□□ 1.23
SQSTM1-215ENST00000514093 CACNA1IQ9P0X4 2223 aa22.73■■□□□ 1.23
SQSTM1-215ENST00000514093 ARL5CA6NH57 179 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 EML1O00423 815 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 KINO60870 393 aaKnown RBP22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 SCNN1GP51170 649 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 LAMTOR4Q0VGL1 99 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 SNW1Q13573 536 aaKnown RBP22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 NTRK3Q16288 839 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 PARM1Q6UWI2 310 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 SRGAP1Q7Z6B7 1085 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 HDAC7Q8WUI4 952 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 SLC7A3Q8WY07 619 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 RABGGTAQ92696 567 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 FGF14Q92915 247 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 CEP170P1Q96L14 293 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 ZFP42Q96MM3 310 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 APOL6Q9BWW8 343 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 GPR62Q9BZJ7 368 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 PLEKHA4Q9H4M7 779 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 CHST7Q9NS84 486 aa22.72■■□□□ 1.23
SQSTM1-215ENST00000514093 FANCMQ8IYD8 2048 aa22.71■■□□□ 1.23
SQSTM1-215ENST00000514093 STARD6P59095 220 aa22.71■■□□□ 1.23
SQSTM1-215ENST00000514093 DSC1Q08554 894 aa22.71■■□□□ 1.23
SQSTM1-215ENST00000514093 KRT32Q14532 448 aa22.71■■□□□ 1.23
SQSTM1-215ENST00000514093 ETNPPLQ8TBG4 499 aa22.71■■□□□ 1.23
SQSTM1-215ENST00000514093 PSPC1Q8WXF1 523 aaKnown RBP22.71■■□□□ 1.23
SQSTM1-215ENST00000514093 CPB2Q96IY4 423 aa22.71■■□□□ 1.23
SQSTM1-215ENST00000514093 UBN1Q9NPG3 1134 aa22.71■■□□□ 1.23
SQSTM1-215ENST00000514093 SPATA6Q9NWH7 488 aaPredicted RBP22.71■■□□□ 1.23
SQSTM1-215ENST00000514093 ZDHHC7Q9NXF8 308 aa22.71■■□□□ 1.23
SQSTM1-215ENST00000514093 MTF2Q9Y483 593 aaPredicted RBP22.71■■□□□ 1.23
SQSTM1-215ENST00000514093 CYP3A7-CYP3A51PA0A087WV96 503 aa22.7■■□□□ 1.22
SQSTM1-215ENST00000514093 PAPLNO95428 1278 aa22.7■■□□□ 1.22
SQSTM1-215ENST00000514093 HMGB1P09429 215 aaKnown RBP22.7■■□□□ 1.22
SQSTM1-215ENST00000514093 CYP3A7P24462 503 aa22.7■■□□□ 1.22
SQSTM1-215ENST00000514093 NTHL1P78549 312 aa22.7■■□□□ 1.22
SQSTM1-215ENST00000514093 LILRA6Q6PI73 481 aa22.7■■□□□ 1.22
SQSTM1-215ENST00000514093 RNF149Q8NC42 400 aa22.7■■□□□ 1.22
SQSTM1-215ENST00000514093 CNNM3Q8NE01 707 aa22.7■■□□□ 1.22
SQSTM1-215ENST00000514093 RNF26Q9BY78 433 aaPredicted RBP22.7■■□□□ 1.22
SQSTM1-215ENST00000514093 WRAP73Q9P2S5 460 aaPredicted RBP22.7■■□□□ 1.22
SQSTM1-215ENST00000514093 GPR179Q6PRD1 2367 aa22.7■■□□□ 1.22
SQSTM1-215ENST00000514093 FSHRP23945 695 aa22.69■■□□□ 1.22
SQSTM1-215ENST00000514093 VARS2Q5ST30 1063 aaKnown RBP22.69■■□□□ 1.22
SQSTM1-215ENST00000514093 FUT10Q6P4F1 479 aa22.69■■□□□ 1.22
SQSTM1-215ENST00000514093 GRASPQ7Z6J2 395 aaPredicted RBP22.69■■□□□ 1.22
SQSTM1-215ENST00000514093 SHDQ96IW2 340 aa22.69■■□□□ 1.22
SQSTM1-215ENST00000514093 COLEC11Q9BWP8 271 aa22.69■■□□□ 1.22
SQSTM1-215ENST00000514093 DHX33Q9H6R0 707 aaKnown RBP22.69■■□□□ 1.22
SQSTM1-215ENST00000514093 NCOA5Q9HCD5 579 aaKnown RBP22.69■■□□□ 1.22
SQSTM1-215ENST00000514093 NCDNQ9UBB6 729 aa22.69■■□□□ 1.22
SQSTM1-215ENST00000514093 CACNA1BQ00975 2339 aa22.69■■□□□ 1.22
SQSTM1-215ENST00000514093 KANSL1LA0AUZ9 987 aa22.68■■□□□ 1.22
SQSTM1-215ENST00000514093 NR1I2O75469 434 aa22.68■■□□□ 1.22
SQSTM1-215ENST00000514093 ZMYND10O75800 440 aa22.68■■□□□ 1.22
SQSTM1-215ENST00000514093 ERLIN2O94905 339 aa22.68■■□□□ 1.22
SQSTM1-215ENST00000514093 QARSP47897 775 aaKnown RBP22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms