RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 PCDHA8Q9Y5H6 950 aa14.21□□□□□ -0.13
LSM6-204ENST00000504181 SHROOM3Q8TF72 1996 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 SPDYE3A6NKU9 549 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 ZMYND10O75800 440 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 CNR2P34972 360 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 CXCL12P48061 93 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 AFF1P51825 1210 aaKnown RBP14.2□□□□□ -0.14
LSM6-204ENST00000504181 MAMSTRQ6ZN01 415 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 LINC01465Q8N7H1 131 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 NLRP7Q8WX94 980 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 B3GALT6Q96L58 329 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 TMEM175Q9BSA9 504 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 IER2Q9BTL4 223 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 PLA2G2FQ9BZM2 168 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 PSTPIP2Q9H939 334 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 LMAN1LQ9HAT1 526 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 AGO4Q9HCK5 861 aaKnown RBP14.2□□□□□ -0.14
LSM6-204ENST00000504181 FAM105AQ9NUU6 356 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 SSUH2Q9Y2M2 353 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 TENM4Q6N022 2769 aa14.2□□□□□ -0.14
LSM6-204ENST00000504181 SALL3Q9BXA9 1300 aa14.19□□□□□ -0.14
LSM6-204ENST00000504181 SKIP12755 728 aa14.19□□□□□ -0.14
LSM6-204ENST00000504181 TMOD1P28289 359 aa14.19□□□□□ -0.14
LSM6-204ENST00000504181 DSG1Q02413 1049 aa14.19□□□□□ -0.14
LSM6-204ENST00000504181 RNF43Q68DV7 783 aa14.19□□□□□ -0.14
LSM6-204ENST00000504181 LONP2Q86WA8 852 aa14.19□□□□□ -0.14
LSM6-204ENST00000504181 ING5Q8WYH8 240 aa14.19□□□□□ -0.14
LSM6-204ENST00000504181 RRP36Q96EU6 259 aaKnown RBP14.19□□□□□ -0.14
LSM6-204ENST00000504181 CNNM2Q9H8M5 875 aa14.19□□□□□ -0.14
LSM6-204ENST00000504181 SENP2Q9HC62 589 aa14.19□□□□□ -0.14
LSM6-204ENST00000504181 CHST12Q9NRB3 414 aa14.19□□□□□ -0.14
LSM6-204ENST00000504181 POLIQ9UNA4 740 aa14.19□□□□□ -0.14
LSM6-204ENST00000504181 PIN4Q9Y237 131 aaKnown RBP14.19□□□□□ -0.14
LSM6-204ENST00000504181 MAGEB2O15479 319 aa14.18□□□□□ -0.14
LSM6-204ENST00000504181 POMCP01189 267 aa14.18□□□□□ -0.14
LSM6-204ENST00000504181 RPL17P18621 184 aaKnown RBP14.18□□□□□ -0.14
LSM6-204ENST00000504181 OR1G1P47890 313 aa14.18□□□□□ -0.14
LSM6-204ENST00000504181 MFAP1P55081 439 aaKnown RBP14.18□□□□□ -0.14
LSM6-204ENST00000504181 MIS18BP1Q6P0N0 1132 aa14.18□□□□□ -0.14
LSM6-204ENST00000504181 LILRA6Q6PI73 481 aa14.18□□□□□ -0.14
LSM6-204ENST00000504181 C19orf48Q6RUI8 117 aa14.18□□□□□ -0.14
LSM6-204ENST00000504181 RNF168Q8IYW5 571 aaPredicted RBP14.18□□□□□ -0.14
LSM6-204ENST00000504181 TRAIPQ9BWF2 469 aa14.18□□□□□ -0.14
LSM6-204ENST00000504181 SEC63Q9UGP8 760 aaKnown RBP14.18□□□□□ -0.14
LSM6-204ENST00000504181 CEP131Q9UPN4 1083 aa14.18□□□□□ -0.14
LSM6-204ENST00000504181 CYSRT1A8MQ03 144 aa14.17□□□□□ -0.14
LSM6-204ENST00000504181 F8W810 466 aa14.17□□□□□ -0.14
LSM6-204ENST00000504181 MAN2B1O00754 1011 aa14.17□□□□□ -0.14
LSM6-204ENST00000504181 CCL16O15467 120 aa14.17□□□□□ -0.14
LSM6-204ENST00000504181 EPN2O95208 641 aa14.17□□□□□ -0.14
LSM6-204ENST00000504181 TROAPQ12815 778 aa14.17□□□□□ -0.14
LSM6-204ENST00000504181 GAS6Q14393 721 aa14.17□□□□□ -0.14
LSM6-204ENST00000504181 IMMTQ16891 758 aaKnown RBP14.17□□□□□ -0.14
LSM6-204ENST00000504181 AGMOQ6ZNB7 445 aa14.17□□□□□ -0.14
LSM6-204ENST00000504181 NPAS3Q8IXF0 933 aa14.17□□□□□ -0.14
LSM6-204ENST00000504181 PGBD4Q96DM1 585 aa14.17□□□□□ -0.14
LSM6-204ENST00000504181 ASCC3Q8N3C0 2202 aaKnown RBP14.17□□□□□ -0.14
LSM6-204ENST00000504181 THADAQ6YHU6 1953 aa14.16□□□□□ -0.14
LSM6-204ENST00000504181 K7ESF4 209 aa14.16□□□□□ -0.14
LSM6-204ENST00000504181 ECI2O75521 394 aa14.16□□□□□ -0.14
LSM6-204ENST00000504181 HOXC13P31276 330 aa14.16□□□□□ -0.14
LSM6-204ENST00000504181 RAB27AP51159 221 aa14.16□□□□□ -0.14
LSM6-204ENST00000504181 KIAA1211LQ6NV74 962 aa14.16□□□□□ -0.14
LSM6-204ENST00000504181 PDZD3Q86UT5 571 aa14.16□□□□□ -0.14
LSM6-204ENST00000504181 ZNF710Q8N1W2 664 aa14.16□□□□□ -0.14
LSM6-204ENST00000504181 FAM3CQ92520 227 aa14.16□□□□□ -0.14
LSM6-204ENST00000504181 DNASE1L2Q92874 299 aa14.16□□□□□ -0.14
LSM6-204ENST00000504181 PGBD1Q96JS3 809 aa14.16□□□□□ -0.14
LSM6-204ENST00000504181 GCOM2Q9BZD3 368 aaPredicted RBP14.16□□□□□ -0.14
LSM6-204ENST00000504181 RSAD1Q9HA92 442 aa14.16□□□□□ -0.14
LSM6-204ENST00000504181 LY9Q9HBG7 655 aa14.16□□□□□ -0.14
LSM6-204ENST00000504181 HCFC1R1Q9NWW0 138 aa14.16□□□□□ -0.14
LSM6-204ENST00000504181 ANKFY1Q9P2R3 1169 aa14.16□□□□□ -0.14
LSM6-204ENST00000504181 MAFBQ9Y5Q3 323 aaPredicted RBP14.16□□□□□ -0.14
LSM6-204ENST00000504181 ZNF623O75123 536 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 EFEMP2O95967 443 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 C1RP00736 705 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 SFPQP23246 707 aaKnown RBP eCLIP14.15□□□□□ -0.14
LSM6-204ENST00000504181 GRM2Q14416 872 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 CEP55Q53EZ4 464 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 PPM1LQ5SGD2 360 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 SH3PXD2AQ5TCZ1 1133 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 LIN9Q5TKA1 542 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 TCEAL6Q6IPX3 200 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 TCEAL3Q969E4 200 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 MCRS1Q96EZ8 462 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 MBOAT7Q96N66 472 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 EDEM2Q9BV94 578 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 SPZ1Q9BXG8 430 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 BRD9Q9H8M2 597 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.15□□□□□ -0.14
LSM6-204ENST00000504181 CHST7Q9NS84 486 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 FNIP2Q9P278 1114 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 KANSL3Q9P2N6 904 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 FBXW11Q9UKB1 542 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 PCDHB2Q9Y5E7 798 aa14.15□□□□□ -0.14
LSM6-204ENST00000504181 PCNX2A6NKB5 2137 aa14.14□□□□□ -0.15
LSM6-204ENST00000504181 A0A087WZ62 844 aa14.14□□□□□ -0.15
LSM6-204ENST00000504181 IFIT3O14879 490 aaKnown RBP14.14□□□□□ -0.15
LSM6-204ENST00000504181 C8AP07357 584 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms