RNA–Protein interactions for RNA: ENST00000498814.1

CPNE1-228, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-228ENST00000498814 ASIC1P78348 528 aa17.1■□□□□ 0.33
CPNE1-228ENST00000498814 GTF2BQ00403 316 aa17.1■□□□□ 0.33
CPNE1-228ENST00000498814 FAM160A1Q05DH4 1040 aa17.1■□□□□ 0.33
CPNE1-228ENST00000498814 SNW1Q13573 536 aaKnown RBP17.1■□□□□ 0.33
CPNE1-228ENST00000498814 TMEM132AQ24JP5 1023 aa17.1■□□□□ 0.33
CPNE1-228ENST00000498814 ATF7IP2Q5U623 682 aa17.1■□□□□ 0.33
CPNE1-228ENST00000498814 UNC13DQ70J99 1090 aa17.1■□□□□ 0.33
CPNE1-228ENST00000498814 PGBD4Q96DM1 585 aa17.1■□□□□ 0.33
CPNE1-228ENST00000498814 ACO2Q99798 780 aaKnown RBP17.1■□□□□ 0.33
CPNE1-228ENST00000498814 EIF2AQ9BY44 585 aaKnown RBP17.1■□□□□ 0.33
CPNE1-228ENST00000498814 BLZF1Q9H2G9 400 aa17.1■□□□□ 0.33
CPNE1-228ENST00000498814 NKX2-4Q9H2Z4 354 aa17.1■□□□□ 0.33
CPNE1-228ENST00000498814 MRPL44Q9H9J2 332 aaKnown RBP17.1■□□□□ 0.33
CPNE1-228ENST00000498814 SLC28A3Q9HAS3 691 aa17.1■□□□□ 0.33
CPNE1-228ENST00000498814 TBX20Q9UMR3 447 aa17.1■□□□□ 0.33
CPNE1-228ENST00000498814 USP20Q9Y2K6 914 aa17.1■□□□□ 0.33
CPNE1-228ENST00000498814 CHD9Q3L8U1 2897 aa17.1■□□□□ 0.33
CPNE1-228ENST00000498814 PVALEFA0A1B0GWK0 134 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 LCHNA4D1U4 455 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 GTPBP6O43824 516 aaPredicted RBP17.09■□□□□ 0.33
CPNE1-228ENST00000498814 GADD45BO75293 160 aaPredicted RBP17.09■□□□□ 0.33
CPNE1-228ENST00000498814 PPP1R37O75864 691 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 IBSPP21815 317 aaPredicted RBP17.09■□□□□ 0.33
CPNE1-228ENST00000498814 CASP1P29466 404 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 COASYQ13057 564 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 CUL4BQ13620 913 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 KANK3Q6NY19 840 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 ZPBP2Q6X784 338 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 CDR2LQ86X02 465 aaPredicted RBP17.09■□□□□ 0.33
CPNE1-228ENST00000498814 GRAMD1CQ8IYS0 662 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 CMTR2Q8IYT2 770 aaKnown RBP17.09■□□□□ 0.33
CPNE1-228ENST00000498814 RNF169Q8NCN4 708 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 SMG8Q8ND04 991 aaKnown RBP17.09■□□□□ 0.33
CPNE1-228ENST00000498814 ADPGKQ9BRR6 497 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 TARS2Q9BW92 718 aaKnown RBP17.09■□□□□ 0.33
CPNE1-228ENST00000498814 STRA6Q9BX79 667 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 PTPRHQ9HD43 1115 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 RNF19AQ9NV58 838 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 IPPQ9Y573 584 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 RALGAPA2Q2PPJ7 1873 aa17.09■□□□□ 0.33
CPNE1-228ENST00000498814 MYO9BQ13459 2157 aa17.08■□□□□ 0.33
CPNE1-228ENST00000498814 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.08■□□□□ 0.32
CPNE1-228ENST00000498814 NPTXRO95502 500 aa17.08■□□□□ 0.32
CPNE1-228ENST00000498814 FGFR1P11362 822 aa17.08■□□□□ 0.32
CPNE1-228ENST00000498814 UBE2HP62256 183 aa17.08■□□□□ 0.32
CPNE1-228ENST00000498814 EHHADHQ08426 723 aa17.08■□□□□ 0.32
CPNE1-228ENST00000498814 ALCAMQ13740 583 aa17.08■□□□□ 0.32
CPNE1-228ENST00000498814 DCAF4L1Q3SXM0 396 aa17.08■□□□□ 0.32
CPNE1-228ENST00000498814 ZC2HC1CQ53FD0 456 aaPredicted RBP17.08■□□□□ 0.32
CPNE1-228ENST00000498814 EEF1DP3Q658K8 133 aa17.08■□□□□ 0.32
CPNE1-228ENST00000498814 APBB1IPQ7Z5R6 666 aaPredicted RBP17.08■□□□□ 0.32
CPNE1-228ENST00000498814 MAP4K3Q8IVH8 894 aa17.08■□□□□ 0.32
CPNE1-228ENST00000498814 RSPH1Q8WYR4 309 aa17.08■□□□□ 0.32
CPNE1-228ENST00000498814 HVCN1Q96D96 273 aa17.08■□□□□ 0.32
CPNE1-228ENST00000498814 CCDC34Q96HJ3 373 aa17.08■□□□□ 0.32
CPNE1-228ENST00000498814 TIGD1Q96MW7 591 aa17.08■□□□□ 0.32
CPNE1-228ENST00000498814 TRIM6Q9C030 488 aaPredicted RBP17.08■□□□□ 0.32
CPNE1-228ENST00000498814 TMEM117Q9H0C3 514 aa17.08■□□□□ 0.32
CPNE1-228ENST00000498814 TBC1D7Q9P0N9 293 aa17.08■□□□□ 0.32
CPNE1-228ENST00000498814 KIAA1671Q9BY89 1806 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 LINC01553A4QN01 128 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 TOM1L1O75674 476 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 ARHGEF15O94989 841 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 PIGRP01833 764 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 ITGA4P13612 1032 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 PROZP22891 400 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 GATMP50440 423 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 TAP1Q03518 808 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 BTG3Q14201 252 aaPredicted RBP17.07■□□□□ 0.32
CPNE1-228ENST00000498814 CLLU1OSQ5K130 101 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 PPP2R2DQ66LE6 453 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 AGMOQ6ZNB7 445 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 HACE1Q8IYU2 909 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 FIBCD1Q8N539 461 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 LPPQ93052 612 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 UBN1Q9NPG3 1134 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 PCDHB13Q9Y5F0 798 aa17.07■□□□□ 0.32
CPNE1-228ENST00000498814 TDRD15B5MCY1 1934 aaKnown RBP17.06■□□□□ 0.32
CPNE1-228ENST00000498814 TBKBP1A7MCY6 615 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 MEIS3P2A8K0S8 358 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 ABLIM1O14639 778 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 KLRC4O43908 158 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 PRPF40AO75400 957 aaKnown RBP17.06■□□□□ 0.32
CPNE1-228ENST00000498814 NR1I2O75469 434 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 GCNT3O95395 438 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 CASP5P51878 434 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 ZNF697Q5TEC3 545 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 GLB1LQ6UWU2 654 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 MPZL3Q6UWV2 235 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 ABI1Q8IZP0 508 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 HELQQ8TDG4 1101 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 CASD1Q96PB1 797 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 GBP4Q96PP9 640 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 CDT1Q9H211 546 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 RNF39Q9H2S5 420 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 TTYH1Q9H313 450 aaPredicted RBP17.06■□□□□ 0.32
CPNE1-228ENST00000498814 NXF3Q9H4D5 531 aaKnown RBP17.06■□□□□ 0.32
CPNE1-228ENST00000498814 ZNF576Q9H609 170 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 HES2Q9Y543 173 aa17.06■□□□□ 0.32
CPNE1-228ENST00000498814 SZT2Q5T011 3432 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms